PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028554395.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 1108aa MW: 123536 Da PI: 5.2563

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028554395.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.8	2.9e-19	196	242	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l XP_028554395.1 196 KGQWTPEEDEILCNAVHHYHGKNWKKIAECFP-DRTDVQCLHRWQKVL 242 799***************************.**********986 PP
2	Myb_DNA-binding	58.8	1.2e-18	248	294	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++++ v+++G++ W+tI++ ++ gR +kqc++rw+++l XP_028554395.1 248 KGPWSKEEDEIIIEMVNKFGPKKWSTISQALP-GRIGKQCRERWHNHL 294 79****************************.***********97 PP
3	Myb_DNA-binding	47.5	4.2e-15	300	342	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ l++a++ +G++ W+ + ++ gR+++++k++w+ XP_028554395.1 300 KDAWTQEEEIALIHAHQIYGNK-WAELTKFLP-GRSDNSIKNHWN 342 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1108 aa Download sequence
MVLYFKARPE VGDYTIYMGL DKHENEELIK YGFPEDIWFH VDKMSSAHVY LRLNKNQTID 60 DICEGLLEDC AQLVKANSIQ GNKVNNVDVV YTPWYNLKKT PSMDVGQVGF HNSKMVRTVR 120 VEKRVNEIVN RLNKTKVERN PDLKDGRVGS SSATTPDGMG EASSSTSLID GSDCDFLRQQ 180 QALHGRITGP KRRSTKGQWT PEEDEILCNA VHHYHGKNWK KIAECFPDRT DVQCLHRWQK 240 VLNPALVKGP WSKEEDEIII EMVNKFGPKK WSTISQALPG RIGKQCRERW HNHLNPAINK 300 DAWTQEEEIA LIHAHQIYGN KWAELTKFLP GRSDNSIKNH WNSSVKKKLE SYMVQGLIER 360 YPGLPNVVSS TTARIRQKNH DSGFKEKSDI EDSSECSSSA LVASSQSECE MAKPITEDGD 420 HKQEEAIKKE VDSHLPVRSS EYYGSAEEAT FGASKFHCAE VLSEVASPGN FLPKAEGSGN 480 EIRKPSNDDN YEKKDTMPHK PTSLETSTSD AGLGFENNDK PWISLNNGCS PNLFQMHPVT 540 ALGMENLDCA AAMSCKSFIH SPGASMNFAP YSYPVFPVNT SNMYGLPFCQ SLMNVPPSFI 600 CPSANVDIQD LSWRLQNSGS IAGSFIGVPI SDCPMPPVPE VMPSSHETID QGNERQVQLE 660 EKQRLEEETQ TYTSSCDNLT RNLSLASEEK VEFEKDLEPG TVSPPDEMKD NQSENFFNSG 720 SLFYEPPRIQ SLEFPFVCCD IVSSDLQQAY SPLGIRQLMM SSASCNLWDS PSRDDSPDGI 780 LKHAAKSFIC TPSIMKKRQR ELLSPLQERR FDKKSGTDMN RGSFFTSLTK GDEACMEYMI 840 GEVDAENICS SLADDVRDSL SDLKDKRETI KQNKNLGAKL TQKSTASKSS SASKFQPNSE 900 DCRSGAKLSS VVDSDAKEPQ CNAVLVERNT TNLECLSGCS TFISPTACGT KHVDCSITVT 960 SLQYPPSSKK PQIAVEKFTP SIDADYEIFN IFADTPGIKR GLESPSSWKS PLFLNSFLTG 1020 ADFTYEDMRY FMSPGERTYD ALGLMKQLSE QNAGVIAEAQ EVLSNGGQKL NFDNVLSNNS 1080 PQGNGDSSKE QENLIPIPSN VLWMHYTS

Sequence ? help Back to Top

Protein Sequence Length: 1108 aa Download sequence

MVLYFKARPE VGDYTIYMGL DKHENEELIK YGFPEDIWFH VDKMSSAHVY LRLNKNQTID  60
DICEGLLEDC AQLVKANSIQ GNKVNNVDVV YTPWYNLKKT PSMDVGQVGF HNSKMVRTVR  120
VEKRVNEIVN RLNKTKVERN PDLKDGRVGS SSATTPDGMG EASSSTSLID GSDCDFLRQQ  180
QALHGRITGP KRRSTKGQWT PEEDEILCNA VHHYHGKNWK KIAECFPDRT DVQCLHRWQK  240
VLNPALVKGP WSKEEDEIII EMVNKFGPKK WSTISQALPG RIGKQCRERW HNHLNPAINK  300
DAWTQEEEIA LIHAHQIYGN KWAELTKFLP GRSDNSIKNH WNSSVKKKLE SYMVQGLIER  360
YPGLPNVVSS TTARIRQKNH DSGFKEKSDI EDSSECSSSA LVASSQSECE MAKPITEDGD  420
HKQEEAIKKE VDSHLPVRSS EYYGSAEEAT FGASKFHCAE VLSEVASPGN FLPKAEGSGN  480
EIRKPSNDDN YEKKDTMPHK PTSLETSTSD AGLGFENNDK PWISLNNGCS PNLFQMHPVT  540
ALGMENLDCA AAMSCKSFIH SPGASMNFAP YSYPVFPVNT SNMYGLPFCQ SLMNVPPSFI  600
CPSANVDIQD LSWRLQNSGS IAGSFIGVPI SDCPMPPVPE VMPSSHETID QGNERQVQLE  660
EKQRLEEETQ TYTSSCDNLT RNLSLASEEK VEFEKDLEPG TVSPPDEMKD NQSENFFNSG  720
SLFYEPPRIQ SLEFPFVCCD IVSSDLQQAY SPLGIRQLMM SSASCNLWDS PSRDDSPDGI  780
LKHAAKSFIC TPSIMKKRQR ELLSPLQERR FDKKSGTDMN RGSFFTSLTK GDEACMEYMI  840
GEVDAENICS SLADDVRDSL SDLKDKRETI KQNKNLGAKL TQKSTASKSS SASKFQPNSE  900
DCRSGAKLSS VVDSDAKEPQ CNAVLVERNT TNLECLSGCS TFISPTACGT KHVDCSITVT  960
SLQYPPSSKK PQIAVEKFTP SIDADYEIFN IFADTPGIKR GLESPSSWKS PLFLNSFLTG  1020
ADFTYEDMRY FMSPGERTYD ALGLMKQLSE QNAGVIAEAQ EVLSNGGQKL NFDNVLSNNS  1080
PQGNGDSSKE QENLIPIPSN VLWMHYTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	1e-99	MYB family protein