PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028554394.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 791aa    MW: 86070.9 Da    PI: 6.1326
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028554394.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox651.1e-20112167156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe+lF+++++p++++r eL+k+l+L++rqVk+WFqNrR+++k
  XP_028554394.1 112 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLRLETRQVKFWFQNRRTQMK 167
                     688999***********************************************999 PP
2START1801.4e-563155431206
                     HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
           START   1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                     ela++a++elvk+ + +ep+Wv    ++ng+e l +++ ++            + +ea r++++v+ ++  lve+l+d   +W+ +++    + +
  XP_028554394.1 315 ELALSAMDELVKLTEMGEPLWVVGG-QDNGKEMLNIEQYEQLfprcvgvkssdFVSEATRETAMVIINSLALVETLMDAT-RWSDMFPgmiaRTT 407
                     57899*****************887.6666666666666555667778999*99**************************.************** PP

                     EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEE CS
           START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvt 165
                     t++ is+g      g lqlm aelq+lsplvp R++ f+R+++ql +g w++vdvS+d  ++ ++    +  +++++lpSg+++++++ng+skvt
  XP_028554394.1 408 TTDIISTGvggtrnGSLQLMHAELQVLSPLVPiREVNFLRFCKQLADGAWAVVDVSIDGIRDHNSatsAALAAKCRRLPSGCVVQDMPNGYSKVT 502
                     *********************************************************9877777667678889********************** PP

                     EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     wveh++++++ +h+l+r++++sg+a ga++wvatlqrqce+
  XP_028554394.1 503 WVEHAEYDEAAVHQLYRPVLRSGMALGAQRWVATLQRQCEC 543
                     ***************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    
MSFGGLFDSD LPYGSAAMPA GVLSQTRFLS NSAIPKPMFG SAGLSLGLQS NRDGKGEFSR  60
LSVAVSAGDS RGGGELDVLC RNKDEENESR SGSDNLEGGS GDDLDLENPR KKKRYHRHTP  120
QQIQELESLF KECPHPDEKQ RLELSKRLRL ETRQVKFWFQ NRRTQMKTQM ERHENTILRQ  180
ENDKLRAENI SIRDAMRNAI CNNCGGAAVL GDVSLEEQHL RIENARLKDE LDRVCSLAGK  240
FLGRPISTSM PSSSLELAVG CNGGFSSYGS LVPTFSAVSD FVSGGGSNSL GTVITPPSRS  300
VAVVDRSLER SMFLELALSA MDELVKLTEM GEPLWVVGGQ DNGKEMLNIE QYEQLFPRCV  360
GVKSSDFVSE ATRETAMVII NSLALVETLM DATRWSDMFP GMIARTTTTD IISTGVGGTR  420
NGSLQLMHAE LQVLSPLVPI REVNFLRFCK QLADGAWAVV DVSIDGIRDH NSATSAALAA  480
KCRRLPSGCV VQDMPNGYSK VTWVEHAEYD EAAVHQLYRP VLRSGMALGA QRWVATLQRQ  540
CECLAVLMSS SVPNRDHNSI TAAGRRSMLK LAQRMTDNFC AGVCASSARK WSRLRNMGSI  600
GEDVRVMTRQ SMDDPGEPPG VVLSAATSVW LPISPQRLFD FLRDETLRCQ WDILSNGGPM  660
REMAHIAKGQ DQGNAVSLLR ANAVNTNNNS MLILQETCTD ASGSMVVYAP VDVPAMHLVM  720
NGGDSAYVAL LPSGFAVMPD GAGVGSLLTV AFQILVNSLP TAKLTVESVE TVSNLISCTV  780
QKIKVALQCE S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein