PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028554302.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 821aa MW: 94972.8 Da PI: 6.8934

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028554302.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.5	3.8e-22	37	121	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ YA+e+GF vrk+ k++ n++++ r f+C+keg+ +++k+ +++r+ rtgC a++ v++ +dgk++vt++e eHnHel+ XP_028554302.1 37 QFYCLYAREIGFGVRKNVVKRR-ANNTVYARGFCCYKEGFCRTTKEG----KKPRPDVRTGCCAHIIVRLLDDGKFHVTEFEAEHNHELV 121 6**************98887.6666**********998777....9**********************************96 PP
2	FAR1	73.8	3.7e-23	203	295	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA ++GFsvrk++ +++ ++g +++rt+ C keg++++ +++ ++ r +++ +rtgC a++++k +k+g+++v ++e +HnH+l+ XP_028554302.1 203 EFYVNYAARTGFSVRKNQLRRR-TSGLVYSRTYSCHKEGQSRKITEHekrgDKLVRGPKPYERTGCLASMTIKIMKNGRYRVVEFEPKHNHPLV 295 6**************99987.8999*********999887733434444559********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 821 aa Download sequence
MSETVEESRS SSCAGTVEDS WVPKLDMVFE SDEKAYQFYC LYAREIGFGV RKNVVKRRAN 60 NTVYARGFCC YKEGFCRTTK EGKKPRPDVR TGCCAHIIVR LLDDGKFHVT EFEAEHNHEL 120 VGKNQETQME SSNGVGAMAK VGRRNLGRQF TRKSILSSFM PSKCVDPSKL GSDKSLVPVE 180 GVDNENWLPK IDMEFEDDDE AYEFYVNYAA RTGFSVRKNQ LRRRTSGLVY SRTYSCHKEG 240 QSRKITEHEK RGDKLVRGPK PYERTGCLAS MTIKIMKNGR YRVVEFEPKH NHPLVIPSKL 300 HLFRWRWQRE LIGTQANLME SGDDNGKPLE PFDGKKDDQD GSDTSFPLIS LDCRNYIQSK 360 RAYEALPGDV GALMQYVQEK QVEDPSFYYA LQLDRNDKVA SIFWADAKSM FEFECFGDVL 420 CFDTTYKYRD YGRPFSPFLG VNNHKQTVIF GAALLYDETK ESFVWLFETF KTAMSGKKPH 480 VVFTDRCEDM NNAIAAVWPG TIHRVCAWHI YNDAMKHLNH VFQGSTTFAK DFSQCLYDIE 540 DEEDFTSRWE VLLEKYDLGN NSWLAELYED REKWSLAYGR QTFCADINST LTKDTMGSRL 600 KNELDLDLNL LDFFKYFESM LNEKRNAELQ ADYRGCHSAV KMPASKMLRQ AANVYTPAVF 660 KTFQNEFELS MDMMVYLSGQ VQTTYIYKVT IEDSPKEYIV RFDSFDNTCI CSCKKFDCIG 720 IQCRHVMKVL DIINIKELPP QYLLKRWRKD AKSKNLVGIQ EIELENENTL GERYSHLRGI 780 CNRIAVRAAE TVDSYAFIET LSSEVLDQVY KIMKGKPPER H

Sequence ? help Back to Top

Protein Sequence Length: 821 aa Download sequence

MSETVEESRS SSCAGTVEDS WVPKLDMVFE SDEKAYQFYC LYAREIGFGV RKNVVKRRAN  60
NTVYARGFCC YKEGFCRTTK EGKKPRPDVR TGCCAHIIVR LLDDGKFHVT EFEAEHNHEL  120
VGKNQETQME SSNGVGAMAK VGRRNLGRQF TRKSILSSFM PSKCVDPSKL GSDKSLVPVE  180
GVDNENWLPK IDMEFEDDDE AYEFYVNYAA RTGFSVRKNQ LRRRTSGLVY SRTYSCHKEG  240
QSRKITEHEK RGDKLVRGPK PYERTGCLAS MTIKIMKNGR YRVVEFEPKH NHPLVIPSKL  300
HLFRWRWQRE LIGTQANLME SGDDNGKPLE PFDGKKDDQD GSDTSFPLIS LDCRNYIQSK  360
RAYEALPGDV GALMQYVQEK QVEDPSFYYA LQLDRNDKVA SIFWADAKSM FEFECFGDVL  420
CFDTTYKYRD YGRPFSPFLG VNNHKQTVIF GAALLYDETK ESFVWLFETF KTAMSGKKPH  480
VVFTDRCEDM NNAIAAVWPG TIHRVCAWHI YNDAMKHLNH VFQGSTTFAK DFSQCLYDIE  540
DEEDFTSRWE VLLEKYDLGN NSWLAELYED REKWSLAYGR QTFCADINST LTKDTMGSRL  600
KNELDLDLNL LDFFKYFESM LNEKRNAELQ ADYRGCHSAV KMPASKMLRQ AANVYTPAVF  660
KTFQNEFELS MDMMVYLSGQ VQTTYIYKVT IEDSPKEYIV RFDSFDNTCI CSCKKFDCIG  720
IQCRHVMKVL DIINIKELPP QYLLKRWRKD AKSKNLVGIQ EIELENENTL GERYSHLRGI  780
CNRIAVRAAE TVDSYAFIET LSSEVLDQVY KIMKGKPPER H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-104	FAR1 family protein