PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028554123.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 386aa MW: 43352.7 Da PI: 4.4805

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028554123.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	52.1	2.3e-16	33	138	13	127
NAM 13 elvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLv 107 e v+ +L + +g+++++ +vi++v+ +++ePwd+p e wy + ++ ++ t+ r+ ++ + gyWk + ++++ + ++vg k tL XP_028554123.1 33 EKVMLFLSGRKAGDPTPA-NVITNVNPFSLEPWDFP------EGMWYLYNYNNYQSCTEWRNIKVKRIGYWKPMDE-ITIFQ-DAATVGGKITLE 118 445689999999999999.99************9......357******99***********9976.78888.8999**** PP NAM 108 fykgrapkgektdWvmheyr 127 fy g +p g++t W m+ey+ XP_028554123.1 119 FYVGLEPFGNRTGWKMQEYH 138 *****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MELPATGFGL DREKCSSAFT PPLFDADDGS IDEKVMLFLS GRKAGDPTPA NVITNVNPFS 60 LEPWDFPEGM WYLYNYNNYQ SCTEWRNIKV KRIGYWKPMD EITIFQDAAT VGGKITLEFY 120 VGLEPFGNRT GWKMQEYHRD QKSYPESNFS QDYQLMCRVF LQNEKTSKIC DFKLPNEEQL 180 NPSSSCDDDD VLHVESLLMR FVEDEESSLS TDAQNRSQPF TGSDEIVQAA ADSNEVAALE 240 DQNSFSSSDS HAYFGFPMDD YLELNDLCDP GSASSSSNNS SNISFHSNEY FNSEELLRCL 300 GSASSQNMQE EHKDYNCCVS TSAKPVNVVI NPSQPSDSVY SQGNTPKHCV RSHAKRTHSR 360 SSDGSSNGPG SKSLHRIVKY CCLRTL

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MELPATGFGL DREKCSSAFT PPLFDADDGS IDEKVMLFLS GRKAGDPTPA NVITNVNPFS  60
LEPWDFPEGM WYLYNYNNYQ SCTEWRNIKV KRIGYWKPMD EITIFQDAAT VGGKITLEFY  120
VGLEPFGNRT GWKMQEYHRD QKSYPESNFS QDYQLMCRVF LQNEKTSKIC DFKLPNEEQL  180
NPSSSCDDDD VLHVESLLMR FVEDEESSLS TDAQNRSQPF TGSDEIVQAA ADSNEVAALE  240
DQNSFSSSDS HAYFGFPMDD YLELNDLCDP GSASSSSNNS SNISFHSNEY FNSEELLRCL  300
GSASSQNMQE EHKDYNCCVS TSAKPVNVVI NPSQPSDSVY SQGNTPKHCV RSHAKRTHSR  360
SSDGSSNGPG SKSLHRIVKY CCLRTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	3e-15	NAC family protein