PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028554016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MYB | ||||||||
Protein Properties | Length: 837aa MW: 95849.9 Da PI: 8.4446 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41 | 4.4e-13 | 525 | 569 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEd +l av+ +G ++W +a+++ gRt +qc rw++ l XP_028554016.1 525 EWTREEDSKLCTAVETFGDNSWQIVASHLD-GRTSNQCSVRWRNTL 569 6*****************************.************975 PP | |||||||
2 | Myb_DNA-binding | 48.7 | 1.7e-15 | 577 | 621 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grW+ +Ed++l+ v ++G ++Wk+Ia+ ++ gRt qc++rw++ XP_028554016.1 577 GRWSVDEDKRLKVSVILFGAKNWKKIAQFIP-GRTQSQCRERWLNC 621 8******************************.***********996 PP | |||||||
3 | Myb_DNA-binding | 60.8 | 2.8e-19 | 630 | 673 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rWT+eEd +++ a++++G + W+++a++++ gRt++qc+ rw +l XP_028554016.1 630 RWTEEEDAKFLAAIAEHGHR-WSKVAACIP-GRTDNQCRRRWKVLL 673 9*****************99.*********.***********9875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 837 aa Download sequence |
MSSSSWPPPP PSPGCFSPIC GQHDDAADSS FDEGEDEDNL RRFMQTFGSK QDDFCYAGNG 60 DESDSCSDGE GSAGDDIAYL RRLQEQFLPP AVALGSPGTP PILKPLRAFP PLDTDDDEDF 120 ETLRAIQRRF AHYGGVTEAT NADFSPETSG TFSADTSEQD PHNISLTAAM NEEHQEQSNT 180 GLIQPGADAI SVFPKFVKSF TDTPKTLLDN VPEPPYTSLR KRVMNEEHPE EIRSNFNQED 240 GLYSLSVRQF MSSRFPKSVQ NFVHALKKNR SCQRFIREKM MEIEAKIEVN RKLKERIKCL 300 MDFHTACKRK VGRSLCQKRD PRIRLISFRQ QKSSSTVKEN SKKSSALYFA PAENAQMSNY 360 KMVMGRFPVS LRKRQWSNAE KDKLFDGVKQ QCQEMLFLNS MNIGSDFDGL NDSIITSTFD 420 CARHLLTPEI LRSFIRLVNW DRLASMYLPR RSGSSCESRW LNHEDPMINC NPWTSLEDKK 480 LLFTVQDRGL YNWIDMASTL GTNRTPFQCL ARYQRSLNPH ILNREWTREE DSKLCTAVET 540 FGDNSWQIVA SHLDGRTSNQ CSVRWRNTLL PERKRVGRWS VDEDKRLKVS VILFGAKNWK 600 KIAQFIPGRT QSQCRERWLN CLDPSLNLER WTEEEDAKFL AAIAEHGHRW SKVAACIPGR 660 TDNQCRRRWK VLLPHEVPML KAAQQLKRTV LISNFVGREG ERPAIGPNDF TPVVCLPAPD 720 TENNVGVVKK RSRSQNCAES VLTQEVTRMH QAGTIILERQ EINSEAQLKK NRQTTVSLFL 780 WKMLLPTCLL YLLKLLILLL LVSLKGNERD RSETNNHKSL EINPKEMMKK IQKQMVW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 1e-165 | MYB family protein |