PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028554015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MYB | ||||||||
Protein Properties | Length: 979aa MW: 111650 Da PI: 9.6172 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.7 | 5.3e-13 | 525 | 569 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEd +l av+ +G ++W +a+++ gRt +qc rw++ l XP_028554015.1 525 EWTREEDSKLCTAVETFGDNSWQIVASHLD-GRTSNQCSVRWRNTL 569 6*****************************.************975 PP | |||||||
2 | Myb_DNA-binding | 48.5 | 2e-15 | 577 | 621 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grW+ +Ed++l+ v ++G ++Wk+Ia+ ++ gRt qc++rw++ XP_028554015.1 577 GRWSVDEDKRLKVSVILFGAKNWKKIAQFIP-GRTQSQCRERWLNC 621 8******************************.***********996 PP | |||||||
3 | Myb_DNA-binding | 60.6 | 3.4e-19 | 630 | 673 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rWT+eEd +++ a++++G + W+++a++++ gRt++qc+ rw +l XP_028554015.1 630 RWTEEEDAKFLAAIAEHGHR-WSKVAACIP-GRTDNQCRRRWKVLL 673 9*****************99.*********.***********9875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 979 aa Download sequence |
MSSSSWPPPP PSPGCFSPIC GQHDDAADSS FDEGEDEDNL RRFMQTFGSK QDDFCYAGNG 60 DESDSCSDGE GSAGDDIAYL RRLQEQFLPP AVALGSPGTP PILKPLRAFP PLDTDDDEDF 120 ETLRAIQRRF AHYGGVTEAT NADFSPETSG TFSADTSEQD PHNISLTAAM NEEHQEQSNT 180 GLIQPGADAI SVFPKFVKSF TDTPKTLLDN VPEPPYTSLR KRVMNEEHPE EIRSNFNQED 240 GLYSLSVRQF MSSRFPKSVQ NFVHALKKNR SCQRFIREKM MEIEAKIEVN RKLKERIKCL 300 MDFHTACKRK VGRSLCQKRD PRIRLISFRQ QKSSSTVKEN SKKSSALYFA PAENAQMSNY 360 KMVMGRFPVS LRKRQWSNAE KDKLFDGVKQ QCQEMLFLNS MNIGSDFDGL NDSIITSTFD 420 CARHLLTPEI LRSFIRLVNW DRLASMYLPR RSGSSCESRW LNHEDPMINC NPWTSLEDKK 480 LLFTVQDRGL YNWIDMASTL GTNRTPFQCL ARYQRSLNPH ILNREWTREE DSKLCTAVET 540 FGDNSWQIVA SHLDGRTSNQ CSVRWRNTLL PERKRVGRWS VDEDKRLKVS VILFGAKNWK 600 KIAQFIPGRT QSQCRERWLN CLDPSLNLER WTEEEDAKFL AAIAEHGHRW SKVAACIPGR 660 TDNQCRRRWK VLLPHEVPML KAAQQLKRTV LISNFVGREG ERPAIGPNDF TPVVCLPAPD 720 TENNVGVVKK RERSNPGSNK NASRNNNLRK ARNKFRSSTE EKSADNSIII SMEDAFANLS 780 VVSVETSDFT ATGFPKRKRE RSFRNKQSRK SRDKSERDGE ENSKADGLVN SAKSAHFYLP 840 PVPALPSTAD ENENIKRKRK RTSRNKQSQK SRDKSERDDE ENSKADGLVN SAKSAHFYLP 900 PVPALPSTAD ENENIKRKRK RTSRISQPKR LKSHKRKRID DIFASSELSE DALMELPLVH 960 VIKLISRKSR AMHETSKKT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 916 | 938 | KRKRKRTSRISQPKRLKSHKRKR |
2 | 917 | 939 | KRKRKRTSRISQPKRLKSHKRKR |
3 | 918 | 940 | KRKRKRTSRISQPKRLKSHKRKR |
4 | 918 | 932 | KRKRTSRISQPKRLK |
5 | 919 | 941 | KRKRKRTSRISQPKRLKSHKRKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 1e-164 | MYB family protein |