PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028554013.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 980aa MW: 111753 Da PI: 9.6205

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028554013.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.7	5.3e-13	523	567	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEd +l av+ +G ++W +a+++ gRt +qc rw++ l XP_028554013.1 523 EWTREEDSKLCTAVETFGDNSWQIVASHLD-GRTSNQCSVRWRNTL 567 6***************************.**********975 PP
2	Myb_DNA-binding	48.5	2e-15	575	619	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grW+ +Ed++l+ v ++G ++Wk+Ia+ ++ gRt qc++rw++ XP_028554013.1 575 GRWSVDEDKRLKVSVILFGAKNWKKIAQFIP-GRTQSQCRERWLNC 619 8****************************.*********996 PP
3	Myb_DNA-binding	60.6	3.4e-19	628	671	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rWT+eEd +++ a++++G + W+++a++++ gRt++qc+ rw +l XP_028554013.1 628 RWTEEEDAKFLAAIAEHGHR-WSKVAACIP-GRTDNQCRRRWKVLL 671 9***************99.*****.*********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 980 aa Download sequence
MSSSSWPPPP PSPGCFSPIC GQHDDAADSS FDEGEDEDNL RRFMQTFGSK QDDFCYAGNG 60 DESDSCSDGE GSAGDDIAYL RRLQEQFLPP AVALGSPGTP PILKPLRAFP PLDTDDDEDF 120 ETLRAIQRRF AHYGGVTEAT NADFSPETSG TFSADTSEQD PHNISLTAAM NEEHQEQSNT 180 GLIQPGADAI SVFPKFVKSF TDTPKTLLDN VPEPPYTSLR KRVMNEEHPE EIRSNFNQED 240 GLYSLSVRQF MSSRFPKSVQ NFVHALKKNR SCQRFIREKM MEIEAKIEVN RKLKERIKCL 300 MDFHTACKRK VGRSLCQKRD PRIRLISFRQ QKSSSTENSK KSSALYFAPA ENAQMSNYKM 360 VMGRFPVSLR KRQWSNAEKD KLFDGVKQQC QEMLFLNSMN IGSDFDGLND SIITSTFDCA 420 RHLLTPEILR SFIRLVNWDR LASMYLPRRS GSSCESRWLN HEDPMINCNP WTSLEDKKLL 480 FTVQDRGLYN WIDMASTLGT NRTPFQCLAR YQRSLNPHIL NREWTREEDS KLCTAVETFG 540 DNSWQIVASH LDGRTSNQCS VRWRNTLLPE RKRVGRWSVD EDKRLKVSVI LFGAKNWKKI 600 AQFIPGRTQS QCRERWLNCL DPSLNLERWT EEEDAKFLAA IAEHGHRWSK VAACIPGRTD 660 NQCRRRWKVL LPHEVPMLKA AQQLKRTVLI SNFVGREGER PAIGPNDFTP VVCLPAPDTE 720 NNVGVVKKRS RERSNPGSNK NASSRNNNLR KARNKFRSST EEKSADNSII ISMEDAFANL 780 SVVSVETSDF TATGFPKRKR ERSFRNKQSR KSRDKSERDG EENSKADGLV NSAKSAHFYL 840 PPVPALPSTA DENENIKRKR KRTSRNKQSQ KSRDKSERDD EENSKADGLV NSAKSAHFYL 900 PPVPALPSTA DENENIKRKR KRTSRISQPK RLKSHKRKRI DDIFASSELS EDALMELPLV 960 HVIKLISRKS RAMHETSKKT

Sequence ? help Back to Top

Protein Sequence Length: 980 aa Download sequence

MSSSSWPPPP PSPGCFSPIC GQHDDAADSS FDEGEDEDNL RRFMQTFGSK QDDFCYAGNG  60
DESDSCSDGE GSAGDDIAYL RRLQEQFLPP AVALGSPGTP PILKPLRAFP PLDTDDDEDF  120
ETLRAIQRRF AHYGGVTEAT NADFSPETSG TFSADTSEQD PHNISLTAAM NEEHQEQSNT  180
GLIQPGADAI SVFPKFVKSF TDTPKTLLDN VPEPPYTSLR KRVMNEEHPE EIRSNFNQED  240
GLYSLSVRQF MSSRFPKSVQ NFVHALKKNR SCQRFIREKM MEIEAKIEVN RKLKERIKCL  300
MDFHTACKRK VGRSLCQKRD PRIRLISFRQ QKSSSTENSK KSSALYFAPA ENAQMSNYKM  360
VMGRFPVSLR KRQWSNAEKD KLFDGVKQQC QEMLFLNSMN IGSDFDGLND SIITSTFDCA  420
RHLLTPEILR SFIRLVNWDR LASMYLPRRS GSSCESRWLN HEDPMINCNP WTSLEDKKLL  480
FTVQDRGLYN WIDMASTLGT NRTPFQCLAR YQRSLNPHIL NREWTREEDS KLCTAVETFG  540
DNSWQIVASH LDGRTSNQCS VRWRNTLLPE RKRVGRWSVD EDKRLKVSVI LFGAKNWKKI  600
AQFIPGRTQS QCRERWLNCL DPSLNLERWT EEEDAKFLAA IAEHGHRWSK VAACIPGRTD  660
NQCRRRWKVL LPHEVPMLKA AQQLKRTVLI SNFVGREGER PAIGPNDFTP VVCLPAPDTE  720
NNVGVVKKRS RERSNPGSNK NASSRNNNLR KARNKFRSST EEKSADNSII ISMEDAFANL  780
SVVSVETSDF TATGFPKRKR ERSFRNKQSR KSRDKSERDG EENSKADGLV NSAKSAHFYL  840
PPVPALPSTA DENENIKRKR KRTSRNKQSQ KSRDKSERDD EENSKADGLV NSAKSAHFYL  900
PPVPALPSTA DENENIKRKR KRTSRISQPK RLKSHKRKRI DDIFASSELS EDALMELPLV  960
HVIKLISRKS RAMHETSKKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	917	939	KRKRKRTSRISQPKRLKSHKRKR
2	918	940	KRKRKRTSRISQPKRLKSHKRKR
3	919	941	KRKRKRTSRISQPKRLKSHKRKR
4	919	933	KRKRTSRISQPKRLK
5	920	942	KRKRKRTSRISQPKRLKSHKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.2	1e-160	MYB family protein