PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028553890.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 443aa MW: 50369.6 Da PI: 6.4507

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028553890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.6e-05	162	182	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 y+C+ Cg+ ++++ +LkrH XP_028553890.1 162 YVCGVCGRKCRTNPELKRHFL 182 9******************76 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MNPISSGVQH GTLPPLAICP TQPKSALFRR RIRPSLPILS PSLCFTSSNF NPRPIAVCST 60 RVPSPSADIE MVRGRDGSWS AREQNVVVLW DLDNKPPRGQ PYDAAVALRH VAELFGRVVE 120 ISAYANRHAF LHLPQWVLNN RRERRHLDAM ERKGLVVPDE PYVCGVCGRK CRTNPELKRH 180 FLQLHERERQ KKLSRMRSLK GKKRQNYKKR FISGNHKYTE AAHELLSPKK GYGLASELRR 240 AGVFVKTVED KPQAADSAVK RQMQHSMSRG IDCLFLVSDD SDFSEMIKKA READLRTVVI 300 GDGRRALGRL ADFWVPWMRV EKGEVGEEVL LSGRNSGFQE GDEDEYEEEG SFYSSAIFYD 360 DDDQDGEDDD VDDFDDRDHL VDDVVLENFE FGAVKVSAFS EEEMWDGKNV RRGTERGISR 420 VFGATVAGTS LSWTIEDEDD YYI

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MNPISSGVQH GTLPPLAICP TQPKSALFRR RIRPSLPILS PSLCFTSSNF NPRPIAVCST  60
RVPSPSADIE MVRGRDGSWS AREQNVVVLW DLDNKPPRGQ PYDAAVALRH VAELFGRVVE  120
ISAYANRHAF LHLPQWVLNN RRERRHLDAM ERKGLVVPDE PYVCGVCGRK CRTNPELKRH  180
FLQLHERERQ KKLSRMRSLK GKKRQNYKKR FISGNHKYTE AAHELLSPKK GYGLASELRR  240
AGVFVKTVED KPQAADSAVK RQMQHSMSRG IDCLFLVSDD SDFSEMIKKA READLRTVVI  300
GDGRRALGRL ADFWVPWMRV EKGEVGEEVL LSGRNSGFQE GDEDEYEEEG SFYSSAIFYD  360
DDDQDGEDDD VDDFDDRDHL VDDVVLENFE FGAVKVSAFS EEEMWDGKNV RRGTERGISR  420
VFGATVAGTS LSWTIEDEDD YYI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-135	C2H2 family protein