PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028553775.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C3H
Protein Properties Length: 381aa    MW: 43076.1 Da    PI: 8.8197
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028553775.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.53.4e-11306331126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +k +lC++++++G+C+yG +C+F Hg
  XP_028553775.1 306 FKSKLCKNWQKNGECPYGQQCHFTHG 331
                     6889********************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    
MGALRLEPLD IGFGEILQTS SLTQSTTKMN HELVSSSNVD RIAASSVSPM LFVPPDHRIP  60
SPPYLTTERD FTRLSPQISN PMVSQFAISP PIQCSGKTPI TQSSSPVSFE DKDPVAIENR  120
LYLSQLALQN QQIKDRYALC FSKLQDAMNE AENISKKNID LRRANDVLCQ RLGLYFEKHK  180
SRNPMNSDCP PMSRLDGNFR HLSLTEPPDE ASPPSVFGFQ DNRHGRKFPA VDEKSLTLPK  240
CISIRSTRHL KIHQMGGTSS ESNRNIRHRP TTPMMKQKVC LGGAENKDGG EAEDAVELDV  300
CNLRLFKSKL CKNWQKNGEC PYGQQCHFTH GIGELRPVIR HPRYKTELCR MILAGDTCPY  360
GHRCHFRHSI YNDKNEKPNF K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-43C3H family protein