PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028553743.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family NAC
Protein Properties Length: 313aa    MW: 36689.1 Da    PI: 6.9957
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028553743.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.95.5e-5571361129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeelv++yL+kk+++++++l +vik+vd+yk+eP+dL++  k+   e+++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk++
  XP_028553743.1   7 VPPGFRFHPTDEELVNYYLRKKIASRRIDL-NVIKDVDLYKIEPSDLQEicKIGDeEQHDWYFFSHKDKKYPTGTRTNRATTTGFWKATGRDKPI 100
                     69****************************.99**************9534444424459*********************************** PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +s k++l+g++ktLvfykgrap+g+k+dW+mheyrle
  XP_028553743.1 101 YS-KHKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                     **.999*****************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MDTAAHVPPG FRFHPTDEEL VNYYLRKKIA SRRIDLNVIK DVDLYKIEPS DLQEICKIGD  60
EEQHDWYFFS HKDKKYPTGT RTNRATTTGF WKATGRDKPI YSKHKLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLESDEN GTQQDEGWVV CRAFKKRALS IRKGNEFDHD ESTCWYNENM  180
SLMQSTLSQW NMDYNHLPYS FKEQMFQSFH PYDPHLHLPQ LHSPKFHVNV ALPLQKQVNH  240
DCQIERVSFH NSTPKNSQTM DDQVIDWRIL DKFVASQLSQ EGISKDLNDT NAQDNLPIPG  300
KEEGDHSSVM HNA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-103NAC family protein