PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028553680.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 293aa    MW: 34024.9 Da    PI: 7.1641
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028553680.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.18.5e-27958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k+ien++nrqvtfskRrng++KKA+E SvLCd+++a+i+fs++g+l  +s
  XP_028553680.1  9 KKIENNTNRQVTFSKRRNGLIKKAYEFSVLCDIDIALIMFSPSGRLNCFS 58
                    68********************************************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MGRVKLEIKK IENNTNRQVT FSKRRNGLIK KAYEFSVLCD IDIALIMFSP SGRLNCFSGR  60
RRIEDVIEKC INVREHDKGG YAIYLSYLMR TLSKLKYEND MATHQANPEM LNINSKVEEL  120
QVELNACQQQ LQILEKHLRF FEADPVPLYS FISLSELESY QKFFMESLAR VSKKKNFLLG  180
NHLPAYDPSL TSIPMNLQLE QEGMRNPLSY DHIQWIQNSF GRPNQSWFFT SDPLAPLRYE  240
DFVQRGRNHE MCEPMSAQMD QQVGVDTWQQ GYASIEHLSA SIPPAPLITQ VFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.15e-60MIKC_MADS family protein