PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028553679.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 267aa    MW: 30296.5 Da    PI: 8.3152
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028553679.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.77.2e-29958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k+ien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++g+l ++s
  XP_028553679.1  9 KKIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSTFS 58
                    68***********************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MGRVKLEIKK IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SGRLSTFSGR  60
RRIEDVIEKC INVREHDKEG RAKLDKDYLM RTLTKLKYED DMAAHQAKFL EPNPESLDPL  120
ISLSELESYE KFFIESLTHV SEKKNFLLGN NLPAYDPSLT SIPMNLQPEQ EGMTNSLSYN  180
HIQWVQNRFV EFHPTRQESR DVRVDVNSNG PTSGSRHVAT RLCIYGALLG IRAVNNPGMP  240
ALSSVELQVE DGRCGGENVN VKRSLAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-45MIKC_MADS family protein