PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028553411.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 693aa MW: 80177.4 Da PI: 7.1695

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028553411.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.2	2.4e-22	92	182	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn+YA ++GF +r+++s++++r+g ++++fvC keg+++++ ++ ++k++r+r + r gC a+++v ++ ++w++tkl+leH+H + XP_028553411.1 92 FYNAYALRLGFGIRVARSRSERRKGieVLVMKRFVCLKEGHHKKKVTElANKKKRKRLSIRDGCPAMMEVVRRGADRWVITKLVLEHTHVV 182 9************9999986665226789*********99998899999********************************76 PP

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence
MIQETRSMEY TSSEDDELIE DYVDLEEDIM TSDVEQQAGE VAASLHFFNH QDNSLSLVHT 60 IGNELIVSEA DVKSQDPHLG MEFESDTVAR LFYNAYALRL GFGIRVARSR SERRKGIEVL 120 VMKRFVCLKE GHHKKKVTEL ANKKKRKRLS IRDGCPAMME VVRRGADRWV ITKLVLEHTH 180 VVVSPDKVRE IQLNQLTGKD REHENLLREM RQKIFGEGGA QGLLEHFKKV QAENSGFFYS 240 MNVDDRNCLA NIFWADSRAR IAYKYFGDAV VFDTTYKKNE NMMPFAAFSG VNHHLHPVNF 300 GCALIIDKTE SSYAWLFETW LTAMSGRHPI SLTTDQGKAL GAAVAKAFPT TRHRICKWRV 360 LSRCKKKLAD VYSRYPNLPE ELRKYVLECE TSDVFEACWK LVLDKYNLRE NSWLQLVYNI 420 RNKWVPAYLK DSFFAELHTT QRSESINTFF RKNFDTKISL QAFISKFDQA MDNRYEKELQ 480 EDFDALRSQQ ILKTDSHMEK QTAGIYTRAV FERFQAELVE ALDHYTEKIQ DGAISKYTVE 540 RHGDDHIHRR HIVAFNESEK KAVCTCYKFE SSGILCKHVL VVFFFNGVVL LPEHYILKRW 600 TKKAKSGIVF DEGDVETQSY CQESPTLRYH DIFHDALKVA EKGAASIETY KFAKEVLLKA 660 FSEIAGLEEE TSCFDLLLQE LSLRFIGQSQ GKL

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence

MIQETRSMEY TSSEDDELIE DYVDLEEDIM TSDVEQQAGE VAASLHFFNH QDNSLSLVHT  60
IGNELIVSEA DVKSQDPHLG MEFESDTVAR LFYNAYALRL GFGIRVARSR SERRKGIEVL  120
VMKRFVCLKE GHHKKKVTEL ANKKKRKRLS IRDGCPAMME VVRRGADRWV ITKLVLEHTH  180
VVVSPDKVRE IQLNQLTGKD REHENLLREM RQKIFGEGGA QGLLEHFKKV QAENSGFFYS  240
MNVDDRNCLA NIFWADSRAR IAYKYFGDAV VFDTTYKKNE NMMPFAAFSG VNHHLHPVNF  300
GCALIIDKTE SSYAWLFETW LTAMSGRHPI SLTTDQGKAL GAAVAKAFPT TRHRICKWRV  360
LSRCKKKLAD VYSRYPNLPE ELRKYVLECE TSDVFEACWK LVLDKYNLRE NSWLQLVYNI  420
RNKWVPAYLK DSFFAELHTT QRSESINTFF RKNFDTKISL QAFISKFDQA MDNRYEKELQ  480
EDFDALRSQQ ILKTDSHMEK QTAGIYTRAV FERFQAELVE ALDHYTEKIQ DGAISKYTVE  540
RHGDDHIHRR HIVAFNESEK KAVCTCYKFE SSGILCKHVL VVFFFNGVVL LPEHYILKRW  600
TKKAKSGIVF DEGDVETQSY CQESPTLRYH DIFHDALKVA EKGAASIETY KFAKEVLLKA  660
FSEIAGLEEE TSCFDLLLQE LSLRFIGQSQ GKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	148	KKKVTELANKKKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-147	FAR1 family protein