PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028553410.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 694aa MW: 80264.4 Da PI: 7.1695

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028553410.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.2	2.5e-22	93	183	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn+YA ++GF +r+++s++++r+g ++++fvC keg+++++ ++ ++k++r+r + r gC a+++v ++ ++w++tkl+leH+H + XP_028553410.1 93 FYNAYALRLGFGIRVARSRSERRKGieVLVMKRFVCLKEGHHKKKVTElANKKKRKRLSIRDGCPAMMEVVRRGADRWVITKLVLEHTHVV 183 9************9999986665226789*********99998899999********************************76 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MIQETRSSME YTSSEDDELI EDYVDLEEDI MTSDVEQQAG EVAASLHFFN HQDNSLSLVH 60 TIGNELIVSE ADVKSQDPHL GMEFESDTVA RLFYNAYALR LGFGIRVARS RSERRKGIEV 120 LVMKRFVCLK EGHHKKKVTE LANKKKRKRL SIRDGCPAMM EVVRRGADRW VITKLVLEHT 180 HVVVSPDKVR EIQLNQLTGK DREHENLLRE MRQKIFGEGG AQGLLEHFKK VQAENSGFFY 240 SMNVDDRNCL ANIFWADSRA RIAYKYFGDA VVFDTTYKKN ENMMPFAAFS GVNHHLHPVN 300 FGCALIIDKT ESSYAWLFET WLTAMSGRHP ISLTTDQGKA LGAAVAKAFP TTRHRICKWR 360 VLSRCKKKLA DVYSRYPNLP EELRKYVLEC ETSDVFEACW KLVLDKYNLR ENSWLQLVYN 420 IRNKWVPAYL KDSFFAELHT TQRSESINTF FRKNFDTKIS LQAFISKFDQ AMDNRYEKEL 480 QEDFDALRSQ QILKTDSHME KQTAGIYTRA VFERFQAELV EALDHYTEKI QDGAISKYTV 540 ERHGDDHIHR RHIVAFNESE KKAVCTCYKF ESSGILCKHV LVVFFFNGVV LLPEHYILKR 600 WTKKAKSGIV FDEGDVETQS YCQESPTLRY HDIFHDALKV AEKGAASIET YKFAKEVLLK 660 AFSEIAGLEE ETSCFDLLLQ ELSLRFIGQS QGKL

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MIQETRSSME YTSSEDDELI EDYVDLEEDI MTSDVEQQAG EVAASLHFFN HQDNSLSLVH  60
TIGNELIVSE ADVKSQDPHL GMEFESDTVA RLFYNAYALR LGFGIRVARS RSERRKGIEV  120
LVMKRFVCLK EGHHKKKVTE LANKKKRKRL SIRDGCPAMM EVVRRGADRW VITKLVLEHT  180
HVVVSPDKVR EIQLNQLTGK DREHENLLRE MRQKIFGEGG AQGLLEHFKK VQAENSGFFY  240
SMNVDDRNCL ANIFWADSRA RIAYKYFGDA VVFDTTYKKN ENMMPFAAFS GVNHHLHPVN  300
FGCALIIDKT ESSYAWLFET WLTAMSGRHP ISLTTDQGKA LGAAVAKAFP TTRHRICKWR  360
VLSRCKKKLA DVYSRYPNLP EELRKYVLEC ETSDVFEACW KLVLDKYNLR ENSWLQLVYN  420
IRNKWVPAYL KDSFFAELHT TQRSESINTF FRKNFDTKIS LQAFISKFDQ AMDNRYEKEL  480
QEDFDALRSQ QILKTDSHME KQTAGIYTRA VFERFQAELV EALDHYTEKI QDGAISKYTV  540
ERHGDDHIHR RHIVAFNESE KKAVCTCYKF ESSGILCKHV LVVFFFNGVV LLPEHYILKR  600
WTKKAKSGIV FDEGDVETQS YCQESPTLRY HDIFHDALKV AEKGAASIET YKFAKEVLLK  660
AFSEIAGLEE ETSCFDLLLQ ELSLRFIGQS QGKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	149	KKKVTELANKKKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-147	FAR1 family protein