PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028553375.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 397aa    MW: 44174.1 Da    PI: 7.194
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028553375.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.33.2e-114303944373
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                     lLl+cAe ++  d+ +a+++++ ls + sp gd++ R+a+ ft AL+ rl r       +l ps++++++s+ + +++  +++++P+l+f+hlta
  XP_028553375.1  30 LLLRCAELIHRADHPAARRAVSLLSATTSPFGDSTDRIAHQFTLALSLRLDR------LSLLPSPSPTESSDATQSSYLSLNQITPFLRFAHLTA 118
                     8***************************************************......3455556655667777788889*************** PP

            GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.......vak 184
                     NqaIlea+eg++++Hi+Dfd s+GlQWp++lqa+a+R+  ++pps+RiTg gs    +   l++t+ rL++fA++l++pf+f++l       ++ 
  XP_028553375.1 119 NQAILEAIEGHRHIHILDFDTSHGLQWPPFLQAIADRSdpSDPPSIRITGTGS----DLSVLRRTALRLHSFAASLHLPFQFHPLlvppsttASA 209
                     *************************************97788***********....9***************************7776653122 PP

            GRAS 185 rledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                     + +d+     +++++pgE+laVn+vl l +ll++++  +   +++L+ v+ l+P vv+++e+ea+h+s+ F erf+eale+y+a+f+slea+lp+
  XP_028553375.1 210 TNTDIsgGATAFHLRPGETLAVNCVLFLNNLLKSDGFRDA--HAFLRSVRALNPVVVTLAEREASHSSPMFKERFAEALEHYTAVFESLEATLPP 302
                     22222234567899******************88888888..9**************************************************** PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371
                     +s er++vEr+++grei  vv+ e +     he++e+W+e++++aGF pvpls +a +qa+lllr ++  +gyr++  +gs +lgWk++pL+svS
  XP_028553375.1 303 TSGERMTVERVWFGREIAGVVSGEDK-----HERFERWEEMMRAAGFLPVPLSAFALSQARLLLRLHYpAEGYRLQVVRGSCFLGWKSKPLFSVS 392
                     *********************98877.....69************************************************************** PP

            GRAS 372 aW 373
                     +W
  XP_028553375.1 393 SW 394
                     ** PP
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    
MLSSLKSHEE GEEDSHPHHL HHHPPSPRYL LLRCAELIHR ADHPAARRAV SLLSATTSPF  60
GDSTDRIAHQ FTLALSLRLD RLSLLPSPSP TESSDATQSS YLSLNQITPF LRFAHLTANQ  120
AILEAIEGHR HIHILDFDTS HGLQWPPFLQ AIADRSDPSD PPSIRITGTG SDLSVLRRTA  180
LRLHSFAASL HLPFQFHPLL VPPSTTASAT NTDISGGATA FHLRPGETLA VNCVLFLNNL  240
LKSDGFRDAH AFLRSVRALN PVVVTLAERE ASHSSPMFKE RFAEALEHYT AVFESLEATL  300
PPTSGERMTV ERVWFGREIA GVVSGEDKHE RFERWEEMMR AAGFLPVPLS AFALSQARLL  360
LRLHYPAEGY RLQVVRGSCF LGWKSKPLFS VSSWHCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-105GRAS family protein