PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028553189.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 332aa MW: 38119.2 Da PI: 8.3653

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028553189.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.9	6.2e-20	196	242	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l XP_028553189.1 196 KGQWTPEEDEILCNAVHHYHGKNWKKIAECFP-DRTDVQCLHRWQKVL 242 799***************************.**********986 PP
2	Myb_DNA-binding	61	2.5e-19	248	294	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++++ v+++G++ W+tI++ ++ gR +kqc++rw+++l XP_028553189.1 248 KGPWSKEEDEIIIEMVNKFGPKKWSTISQALP-GRIGKQCRERWHNHL 294 79****************************.***********97 PP
3	Myb_DNA-binding	27.2	9.2e-09	300	332	1	35
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 +++WT+eE+ l++a++ +G++ W+ + ++ gR XP_028553189.1 300 KDAWTQEEEIALIHAHQIYGNK-WAELTKFLP-GR 332 689*****************.**99999.88 PP

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence
MVLYFKARPE VGDYTIYMGL DKHENEELIK YGFAEDIWFH VDKMSSAHVY LRLNKNQTID 60 DISEGLLEDC AQLVKANSIQ GNKVNNVDVV YTPWYNLKKT PSMDVGQVGF HNSKMVRTVR 120 VEKRVNEIVN RLNKTKVERN PDLKDGRVGS SSATTPDGMG EASSSTSLID GSDCDFLRQQ 180 QALHGRITGP KRRSTKGQWT PEEDEILCNA VHHYHGKNWK KIAECFPDRT DVQCLHRWQK 240 VLNPALVKGP WSKEEDEIII EMVNKFGPKK WSTISQALPG RIGKQCRERW HNHLNPAINK 300 DAWTQEEEIA LIHAHQIYGN KWAELTKFLP GR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	1e-89	MYB family protein