PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028553188.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 334aa MW: 38351.6 Da PI: 8.3646

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028553188.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.9	6.3e-20	198	244	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l XP_028553188.1 198 KGQWTPEEDEILCNAVHHYHGKNWKKIAECFP-DRTDVQCLHRWQKVL 244 799***************************.**********986 PP
2	Myb_DNA-binding	61	2.6e-19	250	296	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++++ v+++G++ W+tI++ ++ gR +kqc++rw+++l XP_028553188.1 250 KGPWSKEEDEIIIEMVNKFGPKKWSTISQALP-GRIGKQCRERWHNHL 296 79****************************.***********97 PP
3	Myb_DNA-binding	27.2	9.2e-09	302	334	1	35
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 +++WT+eE+ l++a++ +G++ W+ + ++ gR XP_028553188.1 302 KDAWTQEEEIALIHAHQIYGNK-WAELTKFLP-GR 334 689*****************.**99999.88 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MVLYFKARPE VGDYTIYMGL DKHENEELIK YGFAEDIWFH VDKMSSAHVY LRLNKNQTID 60 DISEGLLEDC AQLVKANSIQ GNKVNNVDVV YTPWYNLKKT PSMDVGQVGF HNSKMLFKVR 120 TVRVEKRVNE IVNRLNKTKV ERNPDLKDGR VGSSSATTPD GMGEASSSTS LIDGSDCDFL 180 RQQQALHGIT GPKRRSTKGQ WTPEEDEILC NAVHHYHGKN WKKIAECFPD RTDVQCLHRW 240 QKVLNPALVK GPWSKEEDEI IIEMVNKFGP KKWSTISQAL PGRIGKQCRE RWHNHLNPAI 300 NKDAWTQEEE IALIHAHQIY GNKWAELTKF LPGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	6e-88	MYB family protein