PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028553187.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 335aa MW: 38507.8 Da PI: 8.5607

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028553187.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.9	6.3e-20	199	245	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l XP_028553187.1 199 KGQWTPEEDEILCNAVHHYHGKNWKKIAECFP-DRTDVQCLHRWQKVL 245 799***************************.**********986 PP
2	Myb_DNA-binding	61	2.6e-19	251	297	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++++ v+++G++ W+tI++ ++ gR +kqc++rw+++l XP_028553187.1 251 KGPWSKEEDEIIIEMVNKFGPKKWSTISQALP-GRIGKQCRERWHNHL 297 79****************************.***********97 PP
3	Myb_DNA-binding	27.2	9.3e-09	303	335	1	35
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 +++WT+eE+ l++a++ +G++ W+ + ++ gR XP_028553187.1 303 KDAWTQEEEIALIHAHQIYGNK-WAELTKFLP-GR 335 689*****************.**99999.88 PP

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence
MVLYFKARPE VGDYTIYMGL DKHENEELIK YGFAEDIWFH VDKMSSAHVY LRLNKNQTID 60 DISEGLLEDC AQLVKANSIQ GNKVNNVDVV YTPWYNLKKT PSMDVGQVGF HNSKMLFKVR 120 TVRVEKRVNE IVNRLNKTKV ERNPDLKDGR VGSSSATTPD GMGEASSSTS LIDGSDCDFL 180 RQQQALHGRI TGPKRRSTKG QWTPEEDEIL CNAVHHYHGK NWKKIAECFP DRTDVQCLHR 240 WQKVLNPALV KGPWSKEEDE IIIEMVNKFG PKKWSTISQA LPGRIGKQCR ERWHNHLNPA 300 INKDAWTQEE EIALIHAHQI YGNKWAELTK FLPGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	1e-89	MYB family protein