PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028552976.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARF

Protein Properties

Length: 774aa MW: 87077.2 Da PI: 6.6183

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028552976.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.8	1.7e-22	95	196	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d + W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_028552976.1 95 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDIHDVDWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFI--WNE 185 99***************************8544444..48********************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_028552976.1 186 KNQLLLGIRRA 196 9999**997 PP
2	Auxin_resp	117.3	1.3e-38	221	304	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++Y+Pra++seFv++++k++ka+ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k XP_028552976.1 221 AAHAAATNSRFTIFYHPRACPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 304 79******************************87599****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 774 aa Download sequence
MSEPVLSTFH RATASSFVLK VVASTNKEVE GHIPNYPNLP PQLICQLHDV TMHADAETDE 60 VYTQMTLQPL NPQDLKDTYL PAEMGLPSKQ PMNYFCKTLT ASDTSTHGGF SVPRRAAEKV 120 FPPLDFSQQP PAQELIARDI HDVDWKFRHI FRGQPKRHLL TTGWSIFVSA KRLVAGDSVL 180 FIWNEKNQLL LGIRRANRPQ NAVPSSVISS DSMHIGLLAA AAHAAATNSR FTIFYHPRAC 240 PSEFVIPLSK YVKAVFHTRV SVGMRFRMLF ETEESSVRRY MGTITGISDL DPVRWPNSHW 300 RSVKVNWDES TAGDRQPRAS LWEIEPLTTF PMYPSLFPLR LKPPWYTGVS SLNDYKLDEG 360 NAYMWLRGSS GGGIRSLNFQ SPGIGPCVQQ QVQPQLGNNH TPYQAMDAAA CDIRGMDSLR 420 QPFLNFQQPF QFPQQFCMNP LLQQQVIQQA HHEQIMNSQA QSLLDSQPNI TSNQLLQQPY 480 GDQQKQKGQQ QPTYPELFHV QINNIEQQQL PIPSPLSQKS VFPDSTMNFS SVATPSCIQN 540 LSAAAYSGTN ANNLHFAKTG QTMLAEQHQQ KWDPQFALQK VSTFGNTVLL QPFHGKDDTR 600 ESDVSPTDTQ NHSLFDINVG SSLLLGNVVP NLLNANNNDN VVSSMPFTTS YLQNSLYHSL 660 DESSGMLQHT YDIDPSIKTF VKVYKSGSVG RSLDITRFSN YTELRKALGQ MFGIEGQLEN 720 PLRSGWQLVF VDRENDVLLL GDDPWESFVN NVWYIKILSP EDVQQMGQQG VDLS

Sequence ? help Back to Top

Protein Sequence Length: 774 aa Download sequence

MSEPVLSTFH RATASSFVLK VVASTNKEVE GHIPNYPNLP PQLICQLHDV TMHADAETDE  60
VYTQMTLQPL NPQDLKDTYL PAEMGLPSKQ PMNYFCKTLT ASDTSTHGGF SVPRRAAEKV  120
FPPLDFSQQP PAQELIARDI HDVDWKFRHI FRGQPKRHLL TTGWSIFVSA KRLVAGDSVL  180
FIWNEKNQLL LGIRRANRPQ NAVPSSVISS DSMHIGLLAA AAHAAATNSR FTIFYHPRAC  240
PSEFVIPLSK YVKAVFHTRV SVGMRFRMLF ETEESSVRRY MGTITGISDL DPVRWPNSHW  300
RSVKVNWDES TAGDRQPRAS LWEIEPLTTF PMYPSLFPLR LKPPWYTGVS SLNDYKLDEG  360
NAYMWLRGSS GGGIRSLNFQ SPGIGPCVQQ QVQPQLGNNH TPYQAMDAAA CDIRGMDSLR  420
QPFLNFQQPF QFPQQFCMNP LLQQQVIQQA HHEQIMNSQA QSLLDSQPNI TSNQLLQQPY  480
GDQQKQKGQQ QPTYPELFHV QINNIEQQQL PIPSPLSQKS VFPDSTMNFS SVATPSCIQN  540
LSAAAYSGTN ANNLHFAKTG QTMLAEQHQQ KWDPQFALQK VSTFGNTVLL QPFHGKDDTR  600
ESDVSPTDTQ NHSLFDINVG SSLLLGNVVP NLLNANNNDN VVSSMPFTTS YLQNSLYHSL  660
DESSGMLQHT YDIDPSIKTF VKVYKSGSVG RSLDITRFSN YTELRKALGQ MFGIEGQLEN  720
PLRSGWQLVF VDRENDVLLL GDDPWESFVN NVWYIKILSP EDVQQMGQQG VDLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37020.1	0.0	ARF family protein