PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028552680.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 336aa MW: 38092.2 Da PI: 6.5211

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028552680.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.8	6e-55	25	151	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL kkv +++++ ++i +d++k+ePwdLpk++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ XP_028552680.1 25 LPPGFRFHPTDEELITHYLSKKVIDSNFDP-QAIGVADLNKCEPWDLPKRAKLGEKEWYFFCIRDRKYPTGLRTNRATDTGYWKATGKDKEIYR- 117 79***********************999.88***********99999*************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ vg+kktLvfy+grap+gek++Wvmhe+rle XP_028552680.1 118 GKQIVGMKKTLVFYRGRAPRGEKSNWVMHEFRLE 151 999**************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MEQGNSAVSH GIVFTNTEDE YQMELPPGFR FHPTDEELIT HYLSKKVIDS NFDPQAIGVA 60 DLNKCEPWDL PKRAKLGEKE WYFFCIRDRK YPTGLRTNRA TDTGYWKATG KDKEIYRGKQ 120 IVGMKKTLVF YRGRAPRGEK SNWVMHEFRL EGKYSAYSLP GASKQSEWVI CRVMKKNLIV 180 NGKKLFGATA KIGSFSYGEE MEVELPNPTP TPPPLMDIPA HVTCFSNAME GQKIQDSELF 240 RFFNPAFPAS PAINTSAEFS SFLFSKFAPT SDSFSGHGFM NLLEEDLIAK QGCKLEKEML 300 SISQETGLTS DINPEISSGN EIGRSNYEEC IWNYLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-102	NAC family protein