PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028552463.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 357aa MW: 39797.4 Da PI: 6.923

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028552463.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.7	1.4e-50	11	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPt+eel+ +yL+kk+++++++l +vi++vd++k+ePwd+++k++ +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk + XP_028552463.1 11 VPPGFRFHPTEEELLAYYLRKKIASENIDL-DVIRDVDLNKLEPWDIQEKCRIgstPQNDWYFFSHNDKKYPTGTRTNRATAAGFWKATGRDKVI 104 69**************************.9***********964443122456*******************************9 PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + +g++ktLvfykgrap+g+k+dW+mheyrl XP_028552463.1 105 FICsSFKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 141 98646678*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MSISVNGHST VPPGFRFHPT EEELLAYYLR KKIASENIDL DVIRDVDLNK LEPWDIQEKC 60 RIGSTPQNDW YFFSHNDKKY PTGTRTNRAT AAGFWKATGR DKVIFICSSF KRIGMRKTLV 120 FYKGRAPHGQ KSDWIMHEYR LDQLYDSHSQ SCYGPNMVAE NQLAQEEGWV ICRVFKKKSL 180 QKLSVDQATC SHLTNDSKPH SSSDSSLDQI FHYMTAKSDG ENQAGGQHPG HLRPFDTLLS 240 RATTLMHERF TKLPALDSPA TPAMAGGEVH PVQGTGTDVE LSVYNSREAG FGDWAVIDRL 300 VAYDLDAYPF FPSTSRFLGH GGSGGGGGVE DDGDLWSLTR STTFSGSGHV SYVSPDK

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MSISVNGHST VPPGFRFHPT EEELLAYYLR KKIASENIDL DVIRDVDLNK LEPWDIQEKC  60
RIGSTPQNDW YFFSHNDKKY PTGTRTNRAT AAGFWKATGR DKVIFICSSF KRIGMRKTLV  120
FYKGRAPHGQ KSDWIMHEYR LDQLYDSHSQ SCYGPNMVAE NQLAQEEGWV ICRVFKKKSL  180
QKLSVDQATC SHLTNDSKPH SSSDSSLDQI FHYMTAKSDG ENQAGGQHPG HLRPFDTLLS  240
RATTLMHERF TKLPALDSPA TPAMAGGEVH PVQGTGTDVE LSVYNSREAG FGDWAVIDRL  300
VAYDLDAYPF FPSTSRFLGH GGSGGGGGVE DDGDLWSLTR STTFSGSGHV SYVSPDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	5e-93	NAC family protein