PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028551868.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 274aa MW: 30682.9 Da PI: 8.2228

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028551868.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.7	4.9e-49	13	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtd+el+ +yL+kk++++ + +++i+e+d+yk++Pw+Lp+k+ +e ew+fFs+rd+ky++g r+nra++ g+Wkatg+dk++l++ XP_028551868.1 13 LPPGFRFHPTDQELIIHYLRKKITSSLPPYSSIIAEIDLYKFNPWELPEKAVFGEGEWFFFSPRDRKYPNGLRPNRAAACGFWKATGTDKPILAA 107 79***********************999999***********87778899*********************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ g+kk Lvfy+gr pkg ktdW+m+eyrl XP_028551868.1 108 nGNHCLGVKKALVFYRGRPPKGGKTDWIMNEYRL 141 455669************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence
MMEGSGSLNG SLLPPGFRFH PTDQELIIHY LRKKITSSLP PYSSIIAEID LYKFNPWELP 60 EKAVFGEGEW FFFSPRDRKY PNGLRPNRAA ACGFWKATGT DKPILAANGN HCLGVKKALV 120 FYRGRPPKGG KTDWIMNEYR LLDHSTTSMQ HKHKGTMRLD DWVLCRVRHK GSLLSECDEK 180 PLPPPAAASL FIKSPAQHEL KQQYAGKERN TLFELSDCQL MGDLMDSASK AESAGENSEL 240 VQGGDFFIGE QQQPEFPSGK RMHSIAAGEQ QSPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	8e-77	NAC family protein