PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028551790.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 318aa    MW: 36905.9 Da    PI: 5.7296
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028551790.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.71.1e-111351543
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    n   r  t++ R +g+ KKA+ELSvLC+++v++  fs++
  XP_028551790.1 13 NFCTRLRTYTTRMKGLKKKANELSVLCGVDVLMASFSPE 51
                    5566778*************************9999975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MGRAKLKLIY QENFCTRLRT YTTRMKGLKK KANELSVLCG VDVLMASFSP ELNSLELWPE  60
DTTEFNRIRE RSLSFRMKKS CSCDHEGNGI TEQQISLRMT PSSLSLSSFH EEKAAMEIKL  120
QEVRERLEFL QRQRQEEAER LQAQYEASKA LQQIQDLHRR QQSFSFPGCL PPHITADFEI  180
PLQPELFPHK KLSPFAQFLP LHVQPELFPR HDFNNPLQQD FHPHEQASLF FHSLTPHEQP  240
LLVPLFLPPH EQPLSISLSL SDQEQPSPLS KSTPPHPDAD FNREDAPISL LPFDSPLWSN  300
YECLSWCDSL LLDYETEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.26e-10M-type_MADS family protein