PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028551762.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 228aa MW: 26779.6 Da PI: 7.4689 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.2 | 1.4e-25 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien+ nrqvtfskRr g+lKKA+EL vL+da++ +i+fs +gkly y XP_028551762.1 9 KRIENTNNRQVTFSKRRVGLLKKAHELAVLTDARIGLIVFSASGKLYQYQ 58 79**********************************************97 PP | |||||||
2 | K-box | 61.1 | 4.4e-21 | 82 | 170 | 11 | 99 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +++l+ e+ak+++e++ Lq +++++ GedL+ L++++L+qLe+qLe s+ k+R++Kn+ll +q+e+l +k ++ ++ ++++e XP_028551762.1 82 RNIHQQLHSEIAKIRNETDRLQLSLKQITGEDLTGLTVNDLNQLEEQLEFSVGKVRTRKNQLLNQQLENLHRKVMFEHHVMMEQQHEIE 170 567999*******************************************************************8877766666666655 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MGRGKIEIKR IENTNNRQVT FSKRRVGLLK KAHELAVLTD ARIGLIVFSA SGKLYQYQSP 60 GSSMEEIIDR FLKAENIQFE NRNIHQQLHS EIAKIRNETD RLQLSLKQIT GEDLTGLTVN 120 DLNQLEEQLE FSVGKVRTRK NQLLNQQLEN LHRKVMFEHH VMMEQQHEIE EQKEREIREM 180 GFLEPFGQIL DDSRSLLHLG PEIHPFQLQP IQPNLQEAEL HGHRRKLW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.3 | 9e-42 | MIKC_MADS family protein |