PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028551417.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MYB | ||||||||
Protein Properties | Length: 289aa MW: 32369.1 Da PI: 7.3218 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.5 | 2e-10 | 23 | 70 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 g+WT++E +l+ +a + + + +W ++a +++ g+t +++ s++q++ XP_028551417.1 23 GNWTQQENKLFENALAHFDRDtpdRWMRVAGMIP-GKTVEDVMSHYQDL 70 89*****************99*************.************86 PP | |||||||
2 | Myb_DNA-binding | 47.9 | 3e-15 | 130 | 174 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+++++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky XP_028551417.1 130 PWTEEEHKRFLLGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 174 8*******************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence |
MEVLSPAYFS NYSNWLIGEK KNGNWTQQEN KLFENALAHF DRDTPDRWMR VAGMIPGKTV 60 EDVMSHYQDL EEDVSCIEAG LVPFPGYSSS SFTLDWESGN DFDDMKQAYS IGVKRSGSRL 120 TDHERKKGVP WTEEEHKRFL LGLKKYGKGD WRNISRNFVV TRTPTQVASH AQKYFIRLNS 180 GSKDKRRASI HDITMVNVED SRPPSPSQPS VVTMQSCSAT APGNTEKFSV VVDSKQPNEV 240 ANAFSASPDD AHLVQSSYGI QPYGMKLQAR NSNNGNLNGS IVGHHGVLF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 3e-96 | MYB family protein |