PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028551406.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 26042.7 Da    PI: 9.5386
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028551406.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.11.5e-251059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtf+kRrng+lKKA EL vLCdae+ +i+fs+t++ly+++s
  XP_028551406.1 10 RIDNTTTRQVTFTKRRNGLLKKARELAVLCDAEIGLIVFSNTDRLYDFAS 59
                    8***********************************************86 PP

2K-box62.51.7e-2181169998
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      ++++ + +++e++ L++++ nLq++ R+l+G d++ L l++Lq Le+qL+ sl  iR+kK+++l+++ +el +k + ++++ +++ kk+
  XP_028551406.1  81 HSNSEIQFWRREATCLRQQLYNLQENYRQLMG-DVNGLGLNDLQTLENQLKASLHAIRKKKDQVLIDEAQELIQKVRIMDRKYMDIYKKI 169
                     678999**************************.69*******************************************999999888887 PP

Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MGRGKIAIRR IDNTTTRQVT FTKRRNGLLK KARELAVLCD AEIGLIVFSN TDRLYDFAST  60
SMKSVIERYS KIKEDRHLVM HSNSEIQFWR REATCLRQQL YNLQENYRQL MGDVNGLGLN  120
DLQTLENQLK ASLHAIRKKK DQVLIDEAQE LIQKVRIMDR KYMDIYKKIN PYVQENMELH  180
QQVDASARFN GGFTTCGSLS PTSTDLELSP PQQQTSGTQD DVLKLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-77MIKC_MADS family protein