PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028551403.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 413aa MW: 44540.8 Da PI: 8.6084

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028551403.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.1	1e-29	182	240	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg++fpr+Y+rCt+a +C+++k+v+r+aed +++++tYeg+H+h+ XP_028551403.1 182 ADGCQWRKYGQKMAKGNPFPRAYFRCTMAaDCTARKQVQRCAEDRTILITTYEGKHHHP 240 7*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MVAMKARMDR LGEDNQRLRN ILIQLNRNYN SLKMKLLAAM QQDNNRNGGT TVARQFMDLG 60 PGLKAPAAGI NEDSLTERVS HRWLESPASE LEEAGHHDYL LKKKCCGDHD GKGIVYMDRA 120 IRRDGRSGEG MFRELRPDGG GRPNQKAMLS STSKSSEQQV GEVTMRKARV SVRARCEAPM 180 IADGCQWRKY GQKMAKGNPF PRAYFRCTMA ADCTARKQVQ RCAEDRTILI TTYEGKHHHP 240 LPLAAMAMAS MTSSAASMLL SGSMPSPDAA LINPNLLACA VLPCSSTLAT FSASTSTSFP 300 AVTLDLTGSP ASPLPCHKTE YPEFQIPQIL AQSLCNYSSF SGQQMPAGAG DQKLLSLAET 360 VRAATAEITA DPNLTTLLTA AIKSIIGSDG DGGGARQAES PVAVSNDTEL RSV

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MVAMKARMDR LGEDNQRLRN ILIQLNRNYN SLKMKLLAAM QQDNNRNGGT TVARQFMDLG  60
PGLKAPAAGI NEDSLTERVS HRWLESPASE LEEAGHHDYL LKKKCCGDHD GKGIVYMDRA  120
IRRDGRSGEG MFRELRPDGG GRPNQKAMLS STSKSSEQQV GEVTMRKARV SVRARCEAPM  180
IADGCQWRKY GQKMAKGNPF PRAYFRCTMA ADCTARKQVQ RCAEDRTILI TTYEGKHHHP  240
LPLAAMAMAS MTSSAASMLL SGSMPSPDAA LINPNLLACA VLPCSSTLAT FSASTSTSFP  300
AVTLDLTGSP ASPLPCHKTE YPEFQIPQIL AQSLCNYSSF SGQQMPAGAG DQKLLSLAET  360
VRAATAEITA DPNLTTLLTA AIKSIIGSDG DGGGARQAES PVAVSNDTEL RSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	4e-66	WRKY family protein