PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028550998.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ARR-B
Protein Properties Length: 703aa    MW: 77912.9 Da    PI: 6.5533
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028550998.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.94.8e-28215268155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G ekA+Pk+il++m+v+ Lt+e+v+SHLQkYRl
  XP_028550998.1 215 KPRVVWSVELHRKFVAAVNQL-GVEKAVPKRILDIMNVDKLTRENVASHLQKYRL 268
                     79*******************.********************************8 PP
2Myb_DNA-binding35.22.9e-11217267148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e++ ++v av+qlG +   +k+I   m+  ++t++++ s++qky+
   XP_028550998.1 217 RVVWSVELHRKFVAAVNQLGVEkaVPKRILDIMNvDKLTRENVASHLQKYR 267
                      678********************************99*************7 PP
3Response_reg776.6e-26261341109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ +++l+++l + +y +v+++ ++ +al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge + + + +  G
  XP_028550998.1  26 VLAVDDDPICLKVLETLLIRCQY-NVTTTNQAIKALNMLRENKdkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETKAVMKGITHG 118
                     799********************.***************888888*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel +
  XP_028550998.1 119 ACDYLLKPVRIEELKN 134
                     *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    
MTVEEKRGIM GREEGPGDNF PVGMRVLAVD DDPICLKVLE TLLIRCQYNV TTTNQAIKAL  60
NMLRENKDKF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSANGETKA VMKGITHGAC  120
DYLLKPVRIE ELKNIWQHVV RRRKFDRKER RSLDNGEDCE KLQAANSEGT QATDANGPVN  180
DNGKVNRKRK EQNDEDEDDY EEDTHESEDP SSQKKPRVVW SVELHRKFVA AVNQLGVEKA  240
VPKRILDIMN VDKLTRENVA SHLQKYRLYL KRLSAVASQH ANMAAALGGR DTSYLHMGSF  300
NGFTNFHGLT PFQPSGVSNR TNPKLPGLPG LAPGMVQIGQ TRHSTNIPMN DLSKFQHIAV  360
PVNQHENLFQ GIPTSLELDH LQQKQKGINE LNNHLQGVFS GASNSNLICA TNKSLLLQGH  420
HQQTQLREIG NQPPVAIRST GVDRLEMGSV VSAHLPDLSK CSETWQNTPS LNVYGVNSLS  480
TGVPYNDDSM ISSNMGTSLA STVAQLHGNP LNMSSKNLLV TTQDSLIRRD MQCQTSSLGG  540
TTLLMSSGIA DPKFLSFKSS GNVEQKSNDP KQQQNALGPN MAFSSSCNST LSNQTLLNNV  600
AETQRLKNRI YNKKMDTIMI NQPSLDTAFI TQYAKTDKSH CDNRLTFCED NMFGSSKMQG  660
DFVSNNCNFD DLMNSTIKPE RDDIGFVVDG ELGSDLFSLS TCL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-118ARR-B family protein