PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028550923.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MIKC_MADS

Protein Properties

Length: 234aa MW: 27194.6 Da PI: 8.9734

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028550923.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98	3.8e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fs++g+lyeys+ XP_028550923.1 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSTRGRLYEYSN 59 79***********************************************95 PP
2	K-box	111.2	1e-36	81	173	8	99
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 s +e + ++++qqe+akL+ +i+ Lq+++Rhl+Ge+L+sL+lkeL+qLe++Le++++++RskK+ell+++ie++qk+e elq++n++Lr+k++ XP_028550923.1 81 SlVEVNSQQYYQQESAKLRHQIQLLQNSNRHLMGEGLSSLTLKELKQLENRLERGITRVRSKKHELLFAEIEYMQKREVELQNDNMYLRAKIN 173 24777889***********************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEIALIVFST RGRLYEYSNH 60 SIKATIEKYK KACADSSNPG SLVEVNSQQY YQQESAKLRH QIQLLQNSNR HLMGEGLSSL 120 TLKELKQLEN RLERGITRVR SKKHELLFAE IEYMQKREVE LQNDNMYLRA KINDNERAEH 180 ANIVQAGTDF DNLPNFDSRN YYHLNILETA PHYSHHQDQT ALHLGYETKA DHSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-105	MIKC_MADS family protein