PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028550859.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 508aa    MW: 55350.3 Da    PI: 7.6831
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028550859.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS281.42.6e-861224881373
            GRAS   1 lvelLlecAeavssgdle..laqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                     l++lL+++Aea+s ++++  la+ +L rl+e+      +++ ++Rla++fteAL a l +         p ++++   + e+l a+kl++++sP+
  XP_028550859.1 122 LIHLLIAAAEAISGDQKSphLARVILVRLREIiptDHASASGIERLASHFTEALLALLDN---------PHQPAT--PTGEVLIAFKLLHDMSPC 205
                     689*********98766666************64333344799***************99.........333333..2689999*********** PP

            GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg.ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                     + f+hltaNqaIlea++ge+rvHi+D++i++G+QW++L+qaL s++++ +p+lRiT++ +  +gs+   +e+g+rL+ fA+++g pf+f++   +
  XP_028550859.1 206 VSFGHLTANQAILEAIAGERRVHILDYNIGEGVQWASLIQALISKSSPaAPHLRITALTNGIKGSASGAQEVGRRLSAFAASVGQPFSFRICRLD 300
                     *********************************************966378*********9999***************************9999 PP

            GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleakl 275
                     +++ +++ +++v +gEal+Vn+vlq  +l  +s+sl+s    +L     l P++++++e+e    + + +  F+ +f++ +e y+a+ +sle+++
  XP_028550859.1 301 HTKRFTPAAIKVVKGEALVVNCVLQPAQLS-SSASLTS----FLTGAAALGPRILTIIEEEsspsVARAERGFVSEFMDEVERYMAIWESLETGF 390
                     ****************************97.7788877....*******************55544557779*********************** PP

            GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees.gslvlgWkdrpLvs 369
                     p + + r +vEr++l+++i ++va +  ++   +  +e+  +++ ++GF+ ++ls+++++qa+ll+  ++ dg+ v+++s + l l Wk+r+L+s
  XP_028550859.1 391 PMQGRVREMVERVILRPRIAEAVARAYGRQDGGEVAVERCGDWMAAVGFERLELSSFNVCQAQLLIGLFN-DGFCVDKDSpNKLALRWKSRRLLS 484
                     ****************************99999999**********************************.******88626677********** PP

            GRAS 370 vSaW 373
                     +S+W
  XP_028550859.1 485 ASVW 488
                     **** PP
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    
MDPLIEFVED DEALVSTTKI IPAPAPPPHL PPTRTTTGRL VVVDLNWYHS SGDFTKRLSL  60
LFIVPKAPIS SPSQPLAGAH AIHDWSYPST TTNSHATTPT TEGPTRNELY NINEPSSASR  120
RLIHLLIAAA EAISGDQKSP HLARVILVRL REIIPTDHAS ASGIERLASH FTEALLALLD  180
NPHQPATPTG EVLIAFKLLH DMSPCVSFGH LTANQAILEA IAGERRVHIL DYNIGEGVQW  240
ASLIQALISK SSPAAPHLRI TALTNGIKGS ASGAQEVGRR LSAFAASVGQ PFSFRICRLD  300
HTKRFTPAAI KVVKGEALVV NCVLQPAQLS SSASLTSFLT GAAALGPRIL TIIEEESSPS  360
VARAERGFVS EFMDEVERYM AIWESLETGF PMQGRVREMV ERVILRPRIA EAVARAYGRQ  420
DGGEVAVERC GDWMAAVGFE RLELSSFNVC QAQLLIGLFN DGFCVDKDSP NKLALRWKSR  480
RLLSASVWGL PPPPRTSGFT PFRREQRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.18e-89GRAS family protein