PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028550623.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 916aa MW: 99176.2 Da PI: 5.524

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028550623.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.1	3e-08	80	108	1	27
--S---SGGGG..TS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffar..tGtCkyGdrCkFaHgp 27 +kt+lC+ff+r +G C++Gd C++aHg+ XP_028550623.1 80 WKTSLCSFFRRppGGVCRHGDACRYAHGE 108 8********7779**********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 916 aa Download sequence
MAAMELEVEM EEKLATVGGD RGEATPPSNA SSPVPGDDNR SCGVNLPEKL RSEEDGDEKE 60 ENSPSTGGLR KRGADFHSHW KTSLCSFFRR PPGGVCRHGD ACRYAHGEAE LRPRPDNSWD 120 PTSERAKKLL KTNDGDAISS LTEEDEDAAV DLSGLDKCLI GLPKKWASEN LKSFLDSQGI 180 SYKTAKKKKG MTVGFVSFAD ADQILSAIEV LKVNPFNCKQ VKVADAVCRS QKKKQTMEIT 240 KCGSSTEDGS LLASGDDANV QGILARTKAV CDVVTPLAQM PYNDQLEHKR NSLLQTLKRL 300 TRNARKACPD AVPLPEWVLN SREIGGLPCK LEGILESPLV NGYRNKCEFS VGYSVEGKLT 360 VGFMLGNFRE GVVAVEEPGS CPNVSRISCK YAMLFQDFLQ SSVLPVWSRI DNIGFWRQFT 420 VREGRCHSQV ALGGTAPNEI AEVMLLVQVC SLGHEEEQLR SEFNRMTDAL VHGAAACSPP 480 LPLTAIVVQD HTGISNAAPA NCPLVTLQLP KVDGVNFSGT TATTEARIHD YISNLRFSIS 540 PTAFFQVNTL AAEKLYSLAG DWADLSPDTI LFDICCGTGT IGLNLAHRVG MVVGIEMNES 600 AVSDANRNAE INGIKNCRFI CGKAEDVMGS ILKEYLDAPK QHDVVSPNPG SNGAVIVGNE 660 KNKIICEEDL QDDTVASANV YAANLSEAVN VSASVLAADD PSTESMLPCF EDSSMDKLAG 720 STKRKNVDGS SEQPPQTETG DSSTVITADI CTTQQDEGSR DASYVGRCSS NISNDGVKCT 780 QNLENLLPGE STVTKVTDAA VHQFKRVVAI VDPPRVGLHP TVIKVLRTNP RIRRLVYISC 840 NPETLVANAI ELCTPTTDKL GKGKGNRGWR NMSNAGLARY RVKSMPTSEA FRPVRAMGVD 900 LFPHTPHCEM VMLLER

Sequence ? help Back to Top

Protein Sequence Length: 916 aa Download sequence

MAAMELEVEM EEKLATVGGD RGEATPPSNA SSPVPGDDNR SCGVNLPEKL RSEEDGDEKE  60
ENSPSTGGLR KRGADFHSHW KTSLCSFFRR PPGGVCRHGD ACRYAHGEAE LRPRPDNSWD  120
PTSERAKKLL KTNDGDAISS LTEEDEDAAV DLSGLDKCLI GLPKKWASEN LKSFLDSQGI  180
SYKTAKKKKG MTVGFVSFAD ADQILSAIEV LKVNPFNCKQ VKVADAVCRS QKKKQTMEIT  240
KCGSSTEDGS LLASGDDANV QGILARTKAV CDVVTPLAQM PYNDQLEHKR NSLLQTLKRL  300
TRNARKACPD AVPLPEWVLN SREIGGLPCK LEGILESPLV NGYRNKCEFS VGYSVEGKLT  360
VGFMLGNFRE GVVAVEEPGS CPNVSRISCK YAMLFQDFLQ SSVLPVWSRI DNIGFWRQFT  420
VREGRCHSQV ALGGTAPNEI AEVMLLVQVC SLGHEEEQLR SEFNRMTDAL VHGAAACSPP  480
LPLTAIVVQD HTGISNAAPA NCPLVTLQLP KVDGVNFSGT TATTEARIHD YISNLRFSIS  540
PTAFFQVNTL AAEKLYSLAG DWADLSPDTI LFDICCGTGT IGLNLAHRVG MVVGIEMNES  600
AVSDANRNAE INGIKNCRFI CGKAEDVMGS ILKEYLDAPK QHDVVSPNPG SNGAVIVGNE  660
KNKIICEEDL QDDTVASANV YAANLSEAVN VSASVLAADD PSTESMLPCF EDSSMDKLAG  720
STKRKNVDGS SEQPPQTETG DSSTVITADI CTTQQDEGSR DASYVGRCSS NISNDGVKCT  780
QNLENLLPGE STVTKVTDAA VHQFKRVVAI VDPPRVGLHP TVIKVLRTNP RIRRLVYISC  840
NPETLVANAI ELCTPTTDKL GKGKGNRGWR NMSNAGLARY RVKSMPTSEA FRPVRAMGVD  900
LFPHTPHCEM VMLLER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.2	0.0	C3H family protein