PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028550358.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family WRKY
Protein Properties Length: 280aa    MW: 30115.2 Da    PI: 4.688
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028550358.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.29.4e-3052110259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+++H+h+
  XP_028550358.1  52 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRMDPTTFIVTYSSDHDHS 110
                     69*************************998****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MEAKEEPQLL LLSPSTKKSR RSVQKRVVSV PMVDADGGRS KGGGAGEAAP PSDSWAWRKY  60
GQKPIKGSPY PRGYYRCSSS KGCPARKQVE RSRMDPTTFI VTYSSDHDHS WPAMSKNQRH  120
QQNSPAAATG AATLPESNCS KPVDVENNPV SSDNSLATDQ DEKLTDLMVE ESAGLMIPDA  180
FGWFAQVSSP SSNSPAAASD AEFFCNPIFG FDDCDKLSGT AVDEEEDALF AGLGELPECS  240
VVFRRGFLER QWRGGEDAKP CGIEAEESTA AAASWCGSTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13744GGRSKGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.13e-44WRKY family protein