PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028550204.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 384aa MW: 43029.4 Da PI: 7.4996

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028550204.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110.9	1.5e-34	47	190	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........t 78 lp+G++F+Ptd+el+ e+L+ kv+ + ++++ i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ XP_028550204.1 47 LPAGVKFDPTDQELI-EHLEGKVSIEGlirshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqpetdirR 139 799**********.99**99977776553333333766646******.555666799**************8567766443 PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l XP_028550204.1 140 GETRWHKTGKTRAVMA-NGKQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 190 3778********.999*******5547999999*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MRRSHIVSSS SSANLIDAKL EEHQMRGSKQ CPNCGHQIEN KPDWFGLPAG VKFDPTDQEL 60 IEHLEGKVSI EGLIRSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS KHFFHRPSKA 120 YTTGTRKRRK IQPETDIRRG ETRWHKTGKT RAVMANGKQK GCKKILVLYT NFGKHRKPEK 180 TNWVMHQYHL GEMEEEKEGE LVVSKIFYQT QPRQCGAVGG GEGIGIGNCS SSKLVVDAGT 240 AAVYSGIEQL QLQQMRQNDD LSFGTFRKSF DEVGLGERAA DHSSEASISR PTNSISGLIS 300 PATVQQASIV LEDPYHVSRF LFQADKFQQQ QHKMVGRPAG AGLEELIMSC TSTDIKPETS 360 IAHPQETEWL KYSYWLPDSH DHHG

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MRRSHIVSSS SSANLIDAKL EEHQMRGSKQ CPNCGHQIEN KPDWFGLPAG VKFDPTDQEL  60
IEHLEGKVSI EGLIRSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS KHFFHRPSKA  120
YTTGTRKRRK IQPETDIRRG ETRWHKTGKT RAVMANGKQK GCKKILVLYT NFGKHRKPEK  180
TNWVMHQYHL GEMEEEKEGE LVVSKIFYQT QPRQCGAVGG GEGIGIGNCS SSKLVVDAGT  240
AAVYSGIEQL QLQQMRQNDD LSFGTFRKSF DEVGLGERAA DHSSEASISR PTNSISGLIS  300
PATVQQASIV LEDPYHVSRF LFQADKFQQQ QHKMVGRPAG AGLEELIMSC TSTDIKPETS  360
IAHPQETEWL KYSYWLPDSH DHHG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-116	NAC family protein