PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028550153.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CAMTA

Protein Properties

Length: 1021aa MW: 115691 Da PI: 5.7158

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028550153.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	177.7	1.4e-55	20	134	3	116
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e ++rwl++ ei++iL n++k+ ++ e++++p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK g+v+vl+cyYah+e++++fqr XP_028550153.1 20 QEaQHRWLRPIEICEILRNYHKFCIAPEPPNKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGEDDENFQR 114 5559***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhyle 116 r+yw+Leeel +ivlvhy+ XP_028550153.1 115 RSYWMLEEELMHIVLVHYRA 134 ****************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1021 aa Download sequence
MAEARISGVT LPLNLEQILQ EAQHRWLRPI EICEILRNYH KFCIAPEPPN KPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDDE NFQRRSYWML 120 EEELMHIVLV HYRAIKGSKA NFLQPREDGA IARIAHADSP AHSTSSANQS QSPSLATDLE 180 SPNSTHLSEF ENDSDIFQPS SRYNSFLKMQ QYGPWMKGNL ANACDPALEK DDPFVQAGMD 240 RLANESDGGL RFTGTKPMNN DMASWHEILE RCSTGLQSST FDVIVASTCA NTMVNFPRQN 300 PVADILNGGF LDAKEDVTTV VDKPMLQFDD EVVDSLVPFN TRVENIQTSD VNHMKNQSDL 360 SLIDYQGLKK YDSFSRWASN ELGEVDDSQI TLNSGIYWST LESDSVIAES SVQNQEHFDT 420 YLMSPLISHD QLFSIIDFSP NWTYAEMETK VLVKGKFFLN KEDVQKYRWS CMFGEIEVQA 480 DILADGTLCC HTPSHKPGRV PFYVTCSNRL ACSEIREFEY KMSKMHELGN TDSDGSDAYD 540 IDLLFRLEKL LILEDFDHSS PDCSHTRERP HINCTVCSMI MEVDDELFNL FKHTPDEDLS 600 HINAENQLLE ESLKEKLHVW LLHKVGEDGK GPNVLDKEGQ GVLHLAAALG YDWAIKPIIA 660 AGVGINFRDL HGWTALHWAA FFGRERTVVT LVALDASPGA LTDPTPEFPS GRTPADLASQ 720 NGYKGIAGFL AESSLFKHLR ELTLKDSESC DLTESSGILG YHHGADKGSS HHAFGGTETS 780 LKDSLSAVRN ATEAAARIYQ VFRMQSFHRK KLTDYVDENC GVSNEDALSL IYVKSNKSGH 840 HVMPVHTAAI KIQNKFRGWK GRKEFLSIRQ HIVKIQAHVR GHQVRKHYRK ILWSVGIVEK 900 VILRWRRKGS GLRGFRSEEP PEGPSNENQV IKEDDYDFLQ EGRKQTEARL EKALARVKSM 960 VQYPEAIDQY RRLLNVVEEL QESDFIQAET PNEIMEPVGV VDLMLELEGL LQDDPHMPPN 1020 W

Sequence ? help Back to Top

Protein Sequence Length: 1021 aa Download sequence

MAEARISGVT LPLNLEQILQ EAQHRWLRPI EICEILRNYH KFCIAPEPPN KPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDDE NFQRRSYWML  120
EEELMHIVLV HYRAIKGSKA NFLQPREDGA IARIAHADSP AHSTSSANQS QSPSLATDLE  180
SPNSTHLSEF ENDSDIFQPS SRYNSFLKMQ QYGPWMKGNL ANACDPALEK DDPFVQAGMD  240
RLANESDGGL RFTGTKPMNN DMASWHEILE RCSTGLQSST FDVIVASTCA NTMVNFPRQN  300
PVADILNGGF LDAKEDVTTV VDKPMLQFDD EVVDSLVPFN TRVENIQTSD VNHMKNQSDL  360
SLIDYQGLKK YDSFSRWASN ELGEVDDSQI TLNSGIYWST LESDSVIAES SVQNQEHFDT  420
YLMSPLISHD QLFSIIDFSP NWTYAEMETK VLVKGKFFLN KEDVQKYRWS CMFGEIEVQA  480
DILADGTLCC HTPSHKPGRV PFYVTCSNRL ACSEIREFEY KMSKMHELGN TDSDGSDAYD  540
IDLLFRLEKL LILEDFDHSS PDCSHTRERP HINCTVCSMI MEVDDELFNL FKHTPDEDLS  600
HINAENQLLE ESLKEKLHVW LLHKVGEDGK GPNVLDKEGQ GVLHLAAALG YDWAIKPIIA  660
AGVGINFRDL HGWTALHWAA FFGRERTVVT LVALDASPGA LTDPTPEFPS GRTPADLASQ  720
NGYKGIAGFL AESSLFKHLR ELTLKDSESC DLTESSGILG YHHGADKGSS HHAFGGTETS  780
LKDSLSAVRN ATEAAARIYQ VFRMQSFHRK KLTDYVDENC GVSNEDALSL IYVKSNKSGH  840
HVMPVHTAAI KIQNKFRGWK GRKEFLSIRQ HIVKIQAHVR GHQVRKHYRK ILWSVGIVEK  900
VILRWRRKGS GLRGFRSEEP PEGPSNENQV IKEDDYDFLQ EGRKQTEARL EKALARVKSM  960
VQYPEAIDQY RRLLNVVEEL QESDFIQAET PNEIMEPVGV VDLMLELEGL LQDDPHMPPN  1020
W

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	CAMTA family protein