PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028550041.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 285aa MW: 32037.7 Da PI: 5.9729 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.2 | 8.1e-05 | 48 | 65 | 2 | 19 |
HHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa 19 r +h++ E+rRR++iN++ XP_028550041.1 48 RSKHSATEQRRRSKINDS 65 889*************95 PP | |||||||
2 | HLH | 19.7 | 1.6e-06 | 82 | 114 | 18 | 54 |
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 s f+ Lr llP++ +K +Ka+ L +++eYI+ L XP_028550041.1 82 SLFQVLRGLLPNS----EQKRDKASFLLEVIEYIRFL 114 5799********8....7*****************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 285 aa Download sequence |
MESVSRSSKV FEDDDDDEEF GKREGSFHKE LTLTIDGRSI DQTASAPRSK HSATEQRRRS 60 KINDSKFYFC CSYGFGIIFT YSLFQVLRGL LPNSEQKRDK ASFLLEVIEY IRFLHEKVQK 120 YESIYPGWID ENTKLLAWNN HQDSGDNIGD ASIIKNGSAP GFVLSEADNL ASHFQWMRAS 180 NPGDCAISND MLDELTIDEG TISVSCAYSQ GLLNNLSEAL QNSGIDLSRA SVSVQINLGR 240 KSGGRSSKPS LSSKLGWRYY CFSTLYQGAC LLAWAFRQKH SECYC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69010.1 | 9e-47 | bHLH family protein |