PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028550028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | NF-YC | ||||||||
Protein Properties | Length: 249aa MW: 28628.1 Da PI: 6.7225 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 29.4 | 1.7e-09 | 6 | 77 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rik+i+++dedv +i+ +P l+ l r+++ + + +t+ s ++++v + +fdfl ++v r XP_028550028.1 6 DTRFPASRIKRIMQTDEDVGKIALAVPLLVY---------LCDRTYNVTLKRGAKTMCSSHLKQCVHNFSVFDFLKETVNR 77 5789***********************8753.........444788888889999********************999876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MRKKLDTRFP ASRIKRIMQT DEDVGKIALA VPLLVYLCDR TYNVTLKRGA KTMCSSHLKQ 60 CVHNFSVFDF LKETVNRVPD VGCSVVVGED RSSKRRKAVD DESNVIDEES KRSKREPVHD 120 SRGRGRGRGR GRGRGRRRGS HETEWDFSHY NKYEGGPETS PQHHHKLEQG ENDFNKTELK 180 EIDMTGTPVP VRDFDLNIDL DENGLAMTNP VLAWPPFTYI NKVTIDPLQL ALIDKRIDEE 240 EDYDNEDDI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 131 | RGRGRGRGRG |
2 | 122 | 132 | RGRGRGRGRGR |
3 | 124 | 133 | RGRGRGRGRG |
4 | 124 | 134 | RGRGRGRGRGR |
5 | 126 | 135 | RGRGRGRGRG |
6 | 126 | 136 | RGRGRGRGRGR |
7 | 128 | 138 | RGRGRGRGRGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 2e-46 | NF-YC family protein |