PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028550028.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family NF-YC
Protein Properties Length: 249aa    MW: 28628.1 Da    PI: 6.7225
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028550028.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC29.41.7e-096771898
           NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                    ++++P +rik+i+++dedv +i+  +P l+          l  r+++ + +   +t+  s ++++v +  +fdfl ++v r
  XP_028550028.1  6 DTRFPASRIKRIMQTDEDVGKIALAVPLLVY---------LCDRTYNVTLKRGAKTMCSSHLKQCVHNFSVFDFLKETVNR 77
                    5789***********************8753.........444788888889999********************999876 PP

Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MRKKLDTRFP ASRIKRIMQT DEDVGKIALA VPLLVYLCDR TYNVTLKRGA KTMCSSHLKQ  60
CVHNFSVFDF LKETVNRVPD VGCSVVVGED RSSKRRKAVD DESNVIDEES KRSKREPVHD  120
SRGRGRGRGR GRGRGRRRGS HETEWDFSHY NKYEGGPETS PQHHHKLEQG ENDFNKTELK  180
EIDMTGTPVP VRDFDLNIDL DENGLAMTNP VLAWPPFTYI NKVTIDPLQL ALIDKRIDEE  240
EDYDNEDDI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122131RGRGRGRGRG
2122132RGRGRGRGRGR
3124133RGRGRGRGRG
4124134RGRGRGRGRGR
5126135RGRGRGRGRG
6126136RGRGRGRGRGR
7128138RGRGRGRGRGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-46NF-YC family protein