PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028549930.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 338aa MW: 36977.5 Da PI: 8.553

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028549930.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.5	2.5e-53	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLkkk+ + +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++ls XP_028549930.1 16 LPPGFRFHPTDEELVVHYLKKKAISAPLPV-TIIAEIDLYKFDPWELPEKANFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILSC 109 79**************************.89***********99999************************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl XP_028549930.1 110 gGTQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 143 67788*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MESTDSSSAS HQQPQLPPGF RFHPTDEELV VHYLKKKAIS APLPVTIIAE IDLYKFDPWE 60 LPEKANFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPILSCG GTQKVGVKKA 120 LVFYGGKPPK GVKTNWIMHE YRLAESSAAS ARLPVATGDY SSAAKKASLR LDDWVLCRIY 180 KKSNSHQRSA EREKLENGCI HGLLGPPAHD RTPQLQLHQP RTNSSTANYT ALLDSADETF 240 FDGLLASEDC QIPACCRANS AISPATKHLT FSTMENITPS AKRFQSSSSS GSGGGGGNGS 300 AASILNLLNL QIPQQLEEAG VVSLFRQPYS LSEINWSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-101	NAC family protein