PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028549918.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | C3H | ||||||||
Protein Properties | Length: 596aa MW: 67427.9 Da PI: 7.2119 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.2 | 3.3e-09 | 115 | 141 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG+Ck+ + C+++H++ XP_028549918.1 115 PGEPECQYFMKTGYCKFKSACRYHHPK 141 5799*********************96 PP | |||||||
2 | zf-CCCH | 27.4 | 6e-09 | 248 | 273 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C++f++tG+Ck+ ++C+++H++ XP_028549918.1 248 GKPECQYFMKTGYCKFKATCRYHHPK 273 789*********************96 PP | |||||||
3 | zf-CCCH | 26.2 | 1.3e-08 | 389 | 414 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C+ff++tG+Ck+ + C+++H++ XP_028549918.1 389 GKPECQFFMKTGQCKFKSACRYHHPK 414 789*********************96 PP | |||||||
4 | zf-CCCH | 25.2 | 2.9e-08 | 532 | 556 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++Cr+f++tG+Ck + C+++H++ XP_028549918.1 532 EPECRYFMKTGHCKLKSACRYHHPK 556 799********************96 PP | |||||||
5 | zf-CCCH | 22.4 | 2.1e-07 | 569 | 592 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + ++C ++ r G+Ck+G+ C+++H XP_028549918.1 569 DKPICTYYGR-GICKFGSACRYSHH 592 6799******.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 596 aa Download sequence |
MRTGGCKFAS HCRFHHPDPT AVIGDSFQDL KNGVPSQHHV LAEQLCETPM PSENPSNEQT 60 DFLGPFTPNR GFQENVHRKG NQTTTSPLHS REMNINDQRQ ILANRDTAEE YPQRPGEPEC 120 QYFMKTGYCK FKSACRYHHP KSNVSFLGLP QRSSSQQLRE TPLPSENTSK EQTAFLGPSS 180 SYVPDLFTPS HGLKTNAQWN GSQSVTNLLH PSEIKIVDQQ QEFVKRDPAY EFSGGEPQQY 240 DAYPQRPGKP ECQYFMKTGY CKFKATCRYH HPKSNLSFLG LPLRPASNDC KQDGPVEQIC 300 EVPLSSEDAS NDQRAFLCPS SSDVQSLFTP IQGIQPNVQW NVDQAVTSLL YPQETKIINH 360 QQELASKDAA YEFSGGEPQQ HDEYPQRPGK PECQFFMKTG QCKFKSACRY HHPKSNLSFP 420 SLPLRSASNN YEQNGSSEQL SEIPLSSENA LNDQRTVLSP SSSNVQGLFT PEQGLWTTQQ 480 WNGDQMATNP LHPPEIKKNE EKHELANTDT AYDLNGGVKS QQLDEYPQRP NEPECRYFMK 540 TGHCKLKSAC RYHHPKSNRS LLTPPLKPDK PICTYYGRGI CKFGSACRYS HHMEHT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 3e-31 | C3H family protein |