PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028549912.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 934aa MW: 106627 Da PI: 7.2114

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028549912.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.2	1.4e-23	91	176	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YAk+ GFsvrk + ++ ++g+i +r + Cs eg+r++++++ ++r++r++ rt+C a+++ k ++dg+w+v+k+ +eHnH+l XP_028549912.1 91 VYNKYAKRKGFSVRKGHLGRR-KDGTIRDRVYLCSYEGTRQKHSTH--NTRKPRPVFRTNCMARIEYKVNRDGVWVVNKVIKEHNHPLI 176 7**************9997.8888***********99887..9************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 934 aa Download sequence
MESSNSYYDD GTVETGEDSV GEKDNYDDRA DTCSKDCASG DNAVLNSIQA LAQFNVGHVN 60 PEDPSAIAED SMHLEPEVGM VFYSEEQAYE VYNKYAKRKG FSVRKGHLGR RKDGTIRDRV 120 YLCSYEGTRQ KHSTHNTRKP RPVFRTNCMA RIEYKVNRDG VWVVNKVIKE HNHPLIRPSK 180 AHLLRSHRRL LLAAQDGQQV NQTDSTLAKS ADGVSGEQDP ESESPVGFLL RVQSSHLHTN 240 RMRELDKGEM QMLLDFLGAK QLKDPSFFYG TQLDDKEQVT NIFWADARSI LDYSYFGDVV 300 LFDTTYRMSK NDLPIAQFIG VNHHKQLVVF GSALLLDETT ESFVWLFRTF MAAMSGCQPK 360 TILTDQCAAI DRAVVMTLPN SSHRLCLWHI LQNAAKNLSH LYSSDSNFQK DFKSYIYECS 420 SEEDFHSGWI TLLNKYDLAG NSYLDDLFGA REKWAYVYNG NTFCASMITL EWNDIMKKHF 480 RKYFNRKLSL SKFIEQYSNS LFQYHEKELQ EDFRSKQSKP VLLVDMPMLN EAAESYTRLL 540 YRDFEVEFKG QLSCLCELIR TDEMMYMFRV SLPEKRCYGL VEFSPSNYTV NCSCKKFEST 600 GILCMHALKV LNNNNILHLP RHYILKRWTK YANDGIMNDK FQSIIEANAN ESLLMLQYSR 660 VCHKAITICL KNSCSKVALG KFGRDVDKLM MEVENLLHNP ALNRQTEELD IFEELHQDTS 720 ETRKKRRGRK YQSKGVLDKK LKGKDQPSCI SGQADISSHP SQITGQTNNV SIRAMVEEST 780 HVPPFYRETA TAYCSVIPAQ PSGISGCASF PPDTGLPPQE SFTPSQVIFD HTIASQGANS 840 PNLAWCATRG RASISVPMPL MQGQNSSYLS WVVPTHTVSN VGMPQRHLDP PMHTTVSNQH 900 QSLSRKLNFD INKDNWASYE EELYPIVRTQ RCPC

Sequence ? help Back to Top

Protein Sequence Length: 934 aa Download sequence

MESSNSYYDD GTVETGEDSV GEKDNYDDRA DTCSKDCASG DNAVLNSIQA LAQFNVGHVN  60
PEDPSAIAED SMHLEPEVGM VFYSEEQAYE VYNKYAKRKG FSVRKGHLGR RKDGTIRDRV  120
YLCSYEGTRQ KHSTHNTRKP RPVFRTNCMA RIEYKVNRDG VWVVNKVIKE HNHPLIRPSK  180
AHLLRSHRRL LLAAQDGQQV NQTDSTLAKS ADGVSGEQDP ESESPVGFLL RVQSSHLHTN  240
RMRELDKGEM QMLLDFLGAK QLKDPSFFYG TQLDDKEQVT NIFWADARSI LDYSYFGDVV  300
LFDTTYRMSK NDLPIAQFIG VNHHKQLVVF GSALLLDETT ESFVWLFRTF MAAMSGCQPK  360
TILTDQCAAI DRAVVMTLPN SSHRLCLWHI LQNAAKNLSH LYSSDSNFQK DFKSYIYECS  420
SEEDFHSGWI TLLNKYDLAG NSYLDDLFGA REKWAYVYNG NTFCASMITL EWNDIMKKHF  480
RKYFNRKLSL SKFIEQYSNS LFQYHEKELQ EDFRSKQSKP VLLVDMPMLN EAAESYTRLL  540
YRDFEVEFKG QLSCLCELIR TDEMMYMFRV SLPEKRCYGL VEFSPSNYTV NCSCKKFEST  600
GILCMHALKV LNNNNILHLP RHYILKRWTK YANDGIMNDK FQSIIEANAN ESLLMLQYSR  660
VCHKAITICL KNSCSKVALG KFGRDVDKLM MEVENLLHNP ALNRQTEELD IFEELHQDTS  720
ETRKKRRGRK YQSKGVLDKK LKGKDQPSCI SGQADISSHP SQITGQTNNV SIRAMVEEST  780
HVPPFYRETA TAYCSVIPAQ PSGISGCASF PPDTGLPPQE SFTPSQVIFD HTIASQGANS  840
PNLAWCATRG RASISVPMPL MQGQNSSYLS WVVPTHTVSN VGMPQRHLDP PMHTTVSNQH  900
QSLSRKLNFD INKDNWASYE EELYPIVRTQ RCPC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	723	729	RKKRRGR
2	724	744	KKRRGRKYQSKGVLDKKLKGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-118	FAR1 family protein