PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028549911.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 934aa MW: 106627 Da PI: 7.2114 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 75.2 | 1.4e-23 | 91 | 176 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YAk+ GFsvrk + ++ ++g+i +r + Cs eg+r++++++ ++r++r++ rt+C a+++ k ++dg+w+v+k+ +eHnH+l XP_028549911.1 91 VYNKYAKRKGFSVRKGHLGRR-KDGTIRDRVYLCSYEGTRQKHSTH--NTRKPRPVFRTNCMARIEYKVNRDGVWVVNKVIKEHNHPLI 176 7****************9997.8888***************99887..9**************************************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 934 aa Download sequence |
MESSNSYYDD GTVETGEDSV GEKDNYDDRA DTCSKDCASG DNAVLNSIQA LAQFNVGHVN 60 PEDPSAIAED SMHLEPEVGM VFYSEEQAYE VYNKYAKRKG FSVRKGHLGR RKDGTIRDRV 120 YLCSYEGTRQ KHSTHNTRKP RPVFRTNCMA RIEYKVNRDG VWVVNKVIKE HNHPLIRPSK 180 AHLLRSHRRL LLAAQDGQQV NQTDSTLAKS ADGVSGEQDP ESESPVGFLL RVQSSHLHTN 240 RMRELDKGEM QMLLDFLGAK QLKDPSFFYG TQLDDKEQVT NIFWADARSI LDYSYFGDVV 300 LFDTTYRMSK NDLPIAQFIG VNHHKQLVVF GSALLLDETT ESFVWLFRTF MAAMSGCQPK 360 TILTDQCAAI DRAVVMTLPN SSHRLCLWHI LQNAAKNLSH LYSSDSNFQK DFKSYIYECS 420 SEEDFHSGWI TLLNKYDLAG NSYLDDLFGA REKWAYVYNG NTFCASMITL EWNDIMKKHF 480 RKYFNRKLSL SKFIEQYSNS LFQYHEKELQ EDFRSKQSKP VLLVDMPMLN EAAESYTRLL 540 YRDFEVEFKG QLSCLCELIR TDEMMYMFRV SLPEKRCYGL VEFSPSNYTV NCSCKKFEST 600 GILCMHALKV LNNNNILHLP RHYILKRWTK YANDGIMNDK FQSIIEANAN ESLLMLQYSR 660 VCHKAITICL KNSCSKVALG KFGRDVDKLM MEVENLLHNP ALNRQTEELD IFEELHQDTS 720 ETRKKRRGRK YQSKGVLDKK LKGKDQPSCI SGQADISSHP SQITGQTNNV SIRAMVEEST 780 HVPPFYRETA TAYCSVIPAQ PSGISGCASF PPDTGLPPQE SFTPSQVIFD HTIASQGANS 840 PNLAWCATRG RASISVPMPL MQGQNSSYLS WVVPTHTVSN VGMPQRHLDP PMHTTVSNQH 900 QSLSRKLNFD INKDNWASYE EELYPIVRTQ RCPC |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 723 | 729 | RKKRRGR |
2 | 724 | 744 | KKRRGRKYQSKGVLDKKLKGK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-118 | FAR1 family protein |