PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028549802.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 441aa MW: 49881.9 Da PI: 4.3226

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028549802.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.6	8.8e-15	141	225	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++ + aL++a ++ + +r++l+ W ev+kk+ + + rs +qC+++++ l+k+ykk+k+ + s ss++++yf++++ XP_028549802.1 141 WSEDSTFALLDAWGDRFLQNGRKSLRSDEWGEVAKKVsQGSKTPRSEVQCRNRLDTLKKKYKKEKAKYPDY-SSSSRKWVYFRKMD 225 ***********************************4445679*********************97.78888******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MDDTEDDARY PPNSYTQSNR RPIPSSNYSN LHARNNSYQL QIPRGYPDDY VDEDEEERNE 60 VDLAVNDAEE EEDEEVSGGR GYLQTRNEVD DDDEDDADES SESRGKRRRL DQYARGFELV 120 PRSVVTPAVK PLSCRTSLAD WSEDSTFALL DAWGDRFLQN GRKSLRSDEW GEVAKKVSQG 180 SKTPRSEVQC RNRLDTLKKK YKKEKAKYPD YSSSSRKWVY FRKMDELMSS PPPPPPAARQ 240 HSQLPRLPCG IDAGEYVFAS SRLYLNNSDA IAEMRDSPGD TASEGEGDEV DDESDGLPPR 300 REKVGGNSES SFKMLADSIQ KFGAIYEKIE NNRRQQMAEL ERMRKEFHRD LELQKRQILD 360 GAQAEIARIR QEDREEEGEE NTDEDDNGDN DDTDVSAENM SGFELFSNSI KYNTSSGAAS 420 ALITIASDFG STESAASHSS L

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MDDTEDDARY PPNSYTQSNR RPIPSSNYSN LHARNNSYQL QIPRGYPDDY VDEDEEERNE  60
VDLAVNDAEE EEDEEVSGGR GYLQTRNEVD DDDEDDADES SESRGKRRRL DQYARGFELV  120
PRSVVTPAVK PLSCRTSLAD WSEDSTFALL DAWGDRFLQN GRKSLRSDEW GEVAKKVSQG  180
SKTPRSEVQC RNRLDTLKKK YKKEKAKYPD YSSSSRKWVY FRKMDELMSS PPPPPPAARQ  240
HSQLPRLPCG IDAGEYVFAS SRLYLNNSDA IAEMRDSPGD TASEGEGDEV DDESDGLPPR  300
REKVGGNSES SFKMLADSIQ KFGAIYEKIE NNRRQQMAEL ERMRKEFHRD LELQKRQILD  360
GAQAEIARIR QEDREEEGEE NTDEDDNGDN DDTDVSAENM SGFELFSNSI KYNTSSGAAS  420
ALITIASDFG STESAASHSS L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	110	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	8e-59	Trihelix family protein