PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028549759.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARF

Protein Properties

Length: 672aa MW: 74832.2 Da PI: 6.211

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028549759.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	67.4	2.1e-21	127	227	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++aee+ ++++ ++l+ +d++ ++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + + XP_028549759.1 127 FCKTLTASDTSTHGGFSVLRRHAEEClppldmsQHPP--WQELVAKDLHDNEWHFRHIFRGQPRRHLLTTGWSIFVSSKRLVAGDAFIFL--RGD 217 99***************************654444..458**********************************************..347 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el v+v+r XP_028549759.1 218 NGELGVGVRR 227 8889999987 PP
2	Auxin_resp	108.7	6.4e-36	253	335	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+ F+v+Y+Pras seF+++v+k+++a ++ +svGmRfkm+fe+++++err+sGt++gv d ++rW++S+WrsLk XP_028549759.1 253 ASHAVSTGALFSVFYKPRASCSEFIISVNKYLEARSQILSVGMRFKMRFEGDEAPERRFSGTIIGVADKASSRWSDSEWRSLK 335 789******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence
MALPSNPSGR GVPGSAFCGN LLYKELWHAC AGPLVTVPRQ GERVYYFPQG HMEQLEASTQ 60 QGLDHQMPLF DLPSKILCRV VNVELRAESD TDEVYAQITL QPETDQSEVT SPDPLLPEPE 120 RSTFHSFCKT LTASDTSTHG GFSVLRRHAE ECLPPLDMSQ HPPWQELVAK DLHDNEWHFR 180 HIFRGQPRRH LLTTGWSIFV SSKRLVAGDA FIFLRGDNGE LGVGVRRLMR QPNNMPSSVI 240 SSHSMHLGVL ATASHAVSTG ALFSVFYKPR ASCSEFIISV NKYLEARSQI LSVGMRFKMR 300 FEGDEAPERR FSGTIIGVAD KASSRWSDSE WRSLKVQWDE PSSIPRPDWV SPWELEPLVV 360 STSPTSQQPV RNKRARPPVS TSAAPELPSL YGLWKSQPEA NQTFLYSGSH RGHEPYASSS 420 SFPLFPQTPK PGRGLLAANN SNLLSIRPDP QSAPSERKLE ASGGCMLFGI QLVEASPTIE 480 ETSPLTIASG VRDDHLTMIL DTDSDRQSQP SNINYSDAPV VSSDQKSCLR SHSETQSRQT 540 RSCTKVQMQG IAVGRAVDLT KLEGYEDLLQ KLEIMFNIHG ELIGDSNKWK VAYTDDEDDI 600 MMVGDDPWHE FCCIVRKIYI FARDKAKGLS PKIRLPAIDE VSKPVVLRQK QGSESESAQN 660 ASVCSEDHHD ED

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence

MALPSNPSGR GVPGSAFCGN LLYKELWHAC AGPLVTVPRQ GERVYYFPQG HMEQLEASTQ  60
QGLDHQMPLF DLPSKILCRV VNVELRAESD TDEVYAQITL QPETDQSEVT SPDPLLPEPE  120
RSTFHSFCKT LTASDTSTHG GFSVLRRHAE ECLPPLDMSQ HPPWQELVAK DLHDNEWHFR  180
HIFRGQPRRH LLTTGWSIFV SSKRLVAGDA FIFLRGDNGE LGVGVRRLMR QPNNMPSSVI  240
SSHSMHLGVL ATASHAVSTG ALFSVFYKPR ASCSEFIISV NKYLEARSQI LSVGMRFKMR  300
FEGDEAPERR FSGTIIGVAD KASSRWSDSE WRSLKVQWDE PSSIPRPDWV SPWELEPLVV  360
STSPTSQQPV RNKRARPPVS TSAAPELPSL YGLWKSQPEA NQTFLYSGSH RGHEPYASSS  420
SFPLFPQTPK PGRGLLAANN SNLLSIRPDP QSAPSERKLE ASGGCMLFGI QLVEASPTIE  480
ETSPLTIASG VRDDHLTMIL DTDSDRQSQP SNINYSDAPV VSSDQKSCLR SHSETQSRQT  540
RSCTKVQMQG IAVGRAVDLT KLEGYEDLLQ KLEIMFNIHG ELIGDSNKWK VAYTDDEDDI  600
MMVGDDPWHE FCCIVRKIYI FARDKAKGLS PKIRLPAIDE VSKPVVLRQK QGSESESAQN  660
ASVCSEDHHD ED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.2	0.0	ARF family protein