PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028549732.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 844aa MW: 96642.4 Da PI: 7.6089

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028549732.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.1	4.7e-26	53	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA e+GFs+r+s+ + ++ ge+++rtf+Cs+eg r ++++k e+ +++r etr++C+aklk++++ +gk++v ++ eHnHela XP_028549732.1 53 DFYNRYAFEMGFSIRRSSRHLLRKGGEVKDRTFCCSREGIRGKDRRK-ETVQTPRYETRCNCNAKLKISLR-NGKYYVFQFIPEHNHELA 140 6****************************************9999.99999**************.**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 844 aa Download sequence
MCFDKMEHDS GEQCPAGINE CSNGDLEQVA ICFPDEWIPK VDMEFETEQE AYDFYNRYAF 60 EMGFSIRRSS RHLLRKGGEV KDRTFCCSRE GIRGKDRRKE TVQTPRYETR CNCNAKLKIS 120 LRNGKYYVFQ FIPEHNHELA SRTQVHRLRS HRHIIPAQPV TTLGISPKPT FDLMSAEVDG 180 HENLGFILNF GNDLQAEQPL TVKLGDSGGV LEYLEKMQRE DPKFFYSVQL DKLHTATNIF 240 WADSRMIADY KNFGDVVCID TTYKRFNVDN RLFGLLVGVN NHKQLIVFGS FLLDDETSES 300 FKWMFSTFLK AMLGNKPKTV LTDDNIAMAK AIKMCMPEAN HRICVWQIGQ NICQQLSVVV 360 RDYKNFCIDF SSCLYDHDEE AAFIDSWNAM LVKYKLVGNA CLDRLFEKKE QWALVYDRKV 420 FYAGIYNAQR NDNISKELKN FLNAENDILL LFKHLQRLVE GRRYEEIKAD IAASHSMPKL 480 KFDLGILKHA ARTYTPAIFK MFQDELLQTW NCDMHFFGET GSISTYKLKT NGEIQEHTVM 540 FDSSKVSVEC SCKNFEFIGI LCTHALKVLD FKNIRTIPVC YLLKRWMKDA KMVGVVGSCT 600 PCLDPKIELR RRYKELCRLF VQVAAKAAET EETYAIAAGQ INKLLQEVEK RLRKRYKPDP 660 EGEHTELNAL EVELGQTMEG DVSSREQMQT QKLKGMKLTA NKKKKKIRPQ QISVGTAEQN 720 LSAIHLNNDV YNPTSDPVQR NASSSMGREA PQDNFARQHP VTANANLWLD LSQPPTVGAH 780 TSLIADSFQL QAVQASSFSP GLYQIHNPAT TIPINQQGHL NMLQQFEPQL HSLSRQLFSG 840 SAEG

Sequence ? help Back to Top

Protein Sequence Length: 844 aa Download sequence

MCFDKMEHDS GEQCPAGINE CSNGDLEQVA ICFPDEWIPK VDMEFETEQE AYDFYNRYAF  60
EMGFSIRRSS RHLLRKGGEV KDRTFCCSRE GIRGKDRRKE TVQTPRYETR CNCNAKLKIS  120
LRNGKYYVFQ FIPEHNHELA SRTQVHRLRS HRHIIPAQPV TTLGISPKPT FDLMSAEVDG  180
HENLGFILNF GNDLQAEQPL TVKLGDSGGV LEYLEKMQRE DPKFFYSVQL DKLHTATNIF  240
WADSRMIADY KNFGDVVCID TTYKRFNVDN RLFGLLVGVN NHKQLIVFGS FLLDDETSES  300
FKWMFSTFLK AMLGNKPKTV LTDDNIAMAK AIKMCMPEAN HRICVWQIGQ NICQQLSVVV  360
RDYKNFCIDF SSCLYDHDEE AAFIDSWNAM LVKYKLVGNA CLDRLFEKKE QWALVYDRKV  420
FYAGIYNAQR NDNISKELKN FLNAENDILL LFKHLQRLVE GRRYEEIKAD IAASHSMPKL  480
KFDLGILKHA ARTYTPAIFK MFQDELLQTW NCDMHFFGET GSISTYKLKT NGEIQEHTVM  540
FDSSKVSVEC SCKNFEFIGI LCTHALKVLD FKNIRTIPVC YLLKRWMKDA KMVGVVGSCT  600
PCLDPKIELR RRYKELCRLF VQVAAKAAET EETYAIAAGQ INKLLQEVEK RLRKRYKPDP  660
EGEHTELNAL EVELGQTMEG DVSSREQMQT QKLKGMKLTA NKKKKKIRPQ QISVGTAEQN  720
LSAIHLNNDV YNPTSDPVQR NASSSMGREA PQDNFARQHP VTANANLWLD LSQPPTVGAH  780
TSLIADSFQL QAVQASSFSP GLYQIHNPAT TIPINQQGHL NMLQQFEPQL HSLSRQLFSG  840
SAEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-103	FAR1 family protein