PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028549608.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 361aa    MW: 40668.8 Da    PI: 6.3184
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028549608.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH222.9e-07277317954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  XP_028549608.1 277 ARHRRERISERLRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 317
                     599*****************95.....5****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    
MDFCRKKQNR VNHHTDLFLM DNSRWDNQSI IRDEMISNLS CIWSRQYDNF SEPNCDYCVV  60
GGKVEMMINE ALLSSNLDLL HGNLNNEAAV DILQNQEAIS IDTNSIVIPN LVSEAVMRET  120
LSASYQLCSL PPSFTDHNFT SSEELQVIRD TCNNTPSGTD SDNYASHSSN SNLEQPPKER  180
LSYKRKREEH SSSLLNSSSS TADGGFQIVF GDDPTKCKKL RFEIEKYEPD TEAIVQVKEM  240
IYRAAALRPV SLEPEAAVAK PKRKNVRISS DPQTVAARHR RERISERLRV LQKLVPGGSK  300
MDTASMLDEA ANYLKFLKAQ VSALEKLGNS NRSVDHTMKS MLNSFPVTSS CQSFPMQTLF  360
P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-42bHLH family protein