PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028549417.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 806aa MW: 89298.4 Da PI: 5.6629

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028549417.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.2	2.1e-09	738	771	3	33
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...T CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...k 33 +WT E+e l++av+++G+g+WktI + + XP_028549417.1 738 KWTLLEEETLLKAVREHGKGNWKTILISYPsifE 771 8************************987775555 PP

Sequence ? help Back to Top
Protein Sequence Length: 806 aa Download sequence
MELSRKMVAA LLLLVVLLPA FGTIQQATAK RTVAEKIVCG TTVTLPGCTE QSCASACAGG 60 RLSQLSALAM ISASRNVAKR LSSPLHSASL VRFLLRQMAK APNPEPQNSN PLPSTAANTT 120 GGAKCFDVTY LQTLDNDTAS SILEFLVRQR SIPEYVVNAV FLALPLVNPI SSSLKKAILF 180 RRLASELVHR SVSEKTLTIF ELIEEVDREN GGLPPCESMK AAYCAVASSC TAAALRKNVD 240 EFLDSFYRIW ILRMCDIEKS AAASLISEEL REVRDIFWEV VKDPELQPLV VSTDLEETLD 300 RVRGYLEEVW DMEPLFPEVA VAVDDIEEIR ADLRVPGEMK DPREGLSGLK NQRVGFAEPA 360 ELERLLMKAG MEAQNKIVEP IDSDYEYDGQ LDQDKGLEIS KSSSQLLNAG VEKERDSLLD 420 PGNNASELLA ENSEQECNMK CKGSNGQNRR DKLIADSEIG SEVAGTKGKQ TDDDEQALKA 480 SFLDLQSMVR NTLLDASNKA IELQAVNPEE AYSGELRAND VQNRRDEIAS TSKIGTKHTS 540 IEGNEKIATL NKHQKPSCLK EKEENQNGQD VRAKMASLEK VPDIPPDGKN YSTQNNSSSA 600 SLPRASLMER NPTAHTLEDA HNHDFIFMIS SKVSCFTNFS CPTNIHFSHT NSGTENAYFS 660 FVFLYSESLI KVLQESLAKV GRTLKEVSPQ APLKGSGKWT DSPRPEGRIH LHSPTREPVS 720 PLNLIGDKRY AKRRKVRKWT LLEEETLLKA VREHGKGNWK TILISYPSIF EERTEVPKDP 780 IDKNRLTIRL RVEGGGELQF STHLKP

Sequence ? help Back to Top

Protein Sequence Length: 806 aa Download sequence

MELSRKMVAA LLLLVVLLPA FGTIQQATAK RTVAEKIVCG TTVTLPGCTE QSCASACAGG  60
RLSQLSALAM ISASRNVAKR LSSPLHSASL VRFLLRQMAK APNPEPQNSN PLPSTAANTT  120
GGAKCFDVTY LQTLDNDTAS SILEFLVRQR SIPEYVVNAV FLALPLVNPI SSSLKKAILF  180
RRLASELVHR SVSEKTLTIF ELIEEVDREN GGLPPCESMK AAYCAVASSC TAAALRKNVD  240
EFLDSFYRIW ILRMCDIEKS AAASLISEEL REVRDIFWEV VKDPELQPLV VSTDLEETLD  300
RVRGYLEEVW DMEPLFPEVA VAVDDIEEIR ADLRVPGEMK DPREGLSGLK NQRVGFAEPA  360
ELERLLMKAG MEAQNKIVEP IDSDYEYDGQ LDQDKGLEIS KSSSQLLNAG VEKERDSLLD  420
PGNNASELLA ENSEQECNMK CKGSNGQNRR DKLIADSEIG SEVAGTKGKQ TDDDEQALKA  480
SFLDLQSMVR NTLLDASNKA IELQAVNPEE AYSGELRAND VQNRRDEIAS TSKIGTKHTS  540
IEGNEKIATL NKHQKPSCLK EKEENQNGQD VRAKMASLEK VPDIPPDGKN YSTQNNSSSA  600
SLPRASLMER NPTAHTLEDA HNHDFIFMIS SKVSCFTNFS CPTNIHFSHT NSGTENAYFS  660
FVFLYSESLI KVLQESLAKV GRTLKEVSPQ APLKGSGKWT DSPRPEGRIH LHSPTREPVS  720
PLNLIGDKRY AKRRKVRKWT LLEEETLLKA VREHGKGNWK TILISYPSIF EERTEVPKDP  780
IDKNRLTIRL RVEGGGELQF STHLKP