PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028549294.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 351aa    MW: 39544.1 Da    PI: 6.0935
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028549294.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3733.8e-114133630373
            GRAS  30 laspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQ 124
                     +asp+g++++Rlaayfte+La   ++ +++++++ pp++  e   ++e++al+l+ +++Pi+kf h+t N+ +++a+eg+++vHiiD+di+qGlQ
  XP_028549294.1   1 MASPTGSTVHRLAAYFTEGLALSAVKLWPHIFSINPPRDVVEPIDDDEATALRLLDQATPIPKFIHFTLNERLMRAFEGKDKVHIIDLDIKQGLQ 95 
                     58**************************************9999*************************************************** PP

            GRAS 125 WpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvs 219
                     Wp+L+q+LasRp++p ++R+Tg+g+    sk el++tg rLa +Ae+l++pf+f++ v+++led++l++L+vk+gE+laVn+vlqlh++l +++ 
  XP_028549294.1  96 WPSLFQSLASRPNPPIHVRVTGIGE----SKPELQNTGARLAALAESLKLPFQFHA-VVDQLEDVRLWMLHVKEGECLAVNCVLQLHKTLYDDTG 185
                     *************************....***************************.7******************************9977665 PP

            GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314
                     ++   ++++ ++ s++P +v v+e+eadhn++++  rf+++l+yy+a+fd+l+++lp++s+er+k+E++ ++r+i+n++a eg+e   rhe++++
  XP_028549294.1 186 SSL--RDLMCVIGSTNPAIVLVAEEEADHNHHQLQLRFANSLKYYAAIFDALNVSLPEDSSERAKIEKM-FARKIRNIIAREGTE---RHESFSQ 274
                     555..89**************************************************************.**************9...******* PP

            GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373
                     W+++++++ Fk+v +++++  q + +lr++++  y+ve   e+ ++l+l W+++pL++vSaW
  XP_028549294.1 275 WSRKMKDCRFKNVGIGDREKVQSQVILRMYSDSSYSVEkieEDGEALCLKWQEQPLYTVSAW 336
                     *******************************999*9998856777888************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MASPTGSTVH RLAAYFTEGL ALSAVKLWPH IFSINPPRDV VEPIDDDEAT ALRLLDQATP  60
IPKFIHFTLN ERLMRAFEGK DKVHIIDLDI KQGLQWPSLF QSLASRPNPP IHVRVTGIGE  120
SKPELQNTGA RLAALAESLK LPFQFHAVVD QLEDVRLWML HVKEGECLAV NCVLQLHKTL  180
YDDTGSSLRD LMCVIGSTNP AIVLVAEEEA DHNHHQLQLR FANSLKYYAA IFDALNVSLP  240
EDSSERAKIE KMFARKIRNI IAREGTERHE SFSQWSRKMK DCRFKNVGIG DREKVQSQVI  300
LRMYSDSSYS VEKIEEDGEA LCLKWQEQPL YTVSAWAPMD IAGSSTAAQP D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-143GRAS family protein