PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028549236.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 635aa MW: 70387.6 Da PI: 4.4277

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028549236.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.7	1.6e-51	29	157	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv++yLk+kv+g+++++ ++i+evd+y +ePw+Lp +++++++ ewyfF++ +ky++ r+nrat +gyWk+tgkd+++ XP_028549236.1 29 LAPGFRFHPTDEELVSYYLKRKVTGRPIRV-DAISEVDVYGAEPWELPplSRLRSRDLEWYFFTSLGRKYSNRCRTNRATVEGYWKTTGKDRPIQ 122 579*************************.99**********96558888999*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 s +++++g+kktLv++ grap+g++t+Wvmheyrle XP_028549236.1 123 S-RSRTIGMKKTLVYHAGRAPRGQRTNWVMHEYRLE 157 .999****************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence
MIGEASSSRT AAAMPLPLPP PSSPDPTQLA PGFRFHPTDE ELVSYYLKRK VTGRPIRVDA 60 ISEVDVYGAE PWELPPLSRL RSRDLEWYFF TSLGRKYSNR CRTNRATVEG YWKTTGKDRP 120 IQSRSRTIGM KKTLVYHAGR APRGQRTNWV MHEYRLEDEN LSSSGIQQDG YVVCRIFQKT 180 GAGPQNGAQY GAPFIEEEWE LEEEEDANVV LVNEARDDAL MDPCVRDFVQ LGDFLLDEES 240 STQHVDVVPH IARSDDEDHG CDMEDPSNFL IECLKEQGYD GDLPPDADFP TMEERKISLN 300 RLGKQKALEY QSNSSSIQNN AYVQLKDIFG EENASAILNI ESTDCCMERC NNKSSVDEVG 360 HSEILPQDAD NLDDMPSQYP SGPLADGNLV YYDAVFHEVP CLEDGLTNET SLAPKVEFDF 420 LDELMAYYDA TEDNLNYPIP DSFEPRLESS ASSKVVASCS SGKDVPVRQN LEAYESLQRA 480 PINDDPLSGW NGNHIADGEL KDCQDKTLTK RLATLLNAIS APPALAVEAA AISKIVGKTS 540 AASANATDTV HVTAGMIQIQ SLISSVGTES WKLQKHSEMG ILLSYGISKS LSNERRMKVH 600 SGFISSVCWA GFQILLLGSF VLLLSYKLGV CDSNL

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence

MIGEASSSRT AAAMPLPLPP PSSPDPTQLA PGFRFHPTDE ELVSYYLKRK VTGRPIRVDA  60
ISEVDVYGAE PWELPPLSRL RSRDLEWYFF TSLGRKYSNR CRTNRATVEG YWKTTGKDRP  120
IQSRSRTIGM KKTLVYHAGR APRGQRTNWV MHEYRLEDEN LSSSGIQQDG YVVCRIFQKT  180
GAGPQNGAQY GAPFIEEEWE LEEEEDANVV LVNEARDDAL MDPCVRDFVQ LGDFLLDEES  240
STQHVDVVPH IARSDDEDHG CDMEDPSNFL IECLKEQGYD GDLPPDADFP TMEERKISLN  300
RLGKQKALEY QSNSSSIQNN AYVQLKDIFG EENASAILNI ESTDCCMERC NNKSSVDEVG  360
HSEILPQDAD NLDDMPSQYP SGPLADGNLV YYDAVFHEVP CLEDGLTNET SLAPKVEFDF  420
LDELMAYYDA TEDNLNYPIP DSFEPRLESS ASSKVVASCS SGKDVPVRQN LEAYESLQRA  480
PINDDPLSGW NGNHIADGEL KDCQDKTLTK RLATLLNAIS APPALAVEAA AISKIVGKTS  540
AASANATDTV HVTAGMIQIQ SLISSVGTES WKLQKHSEMG ILLSYGISKS LSNERRMKVH  600
SGFISSVCWA GFQILLLGSF VLLLSYKLGV CDSNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	3e-79	NAC family protein