PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028549055.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | C3H | ||||||||
Protein Properties | Length: 519aa MW: 55218.8 Da PI: 6.0592 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.6 | 2.7e-10 | 153 | 177 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G+ CkF H+ XP_028549055.1 153 GEKDCVHYMLTRTCKFGEACKFDHP 177 7889********************9 PP | |||||||
2 | zf-CCCH | 39.7 | 7.9e-13 | 227 | 250 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 C+f+a+tGtCk+G++CkF+H++ XP_028549055.1 227 TVCSFYAKTGTCKFGANCKFHHPK 250 68********************96 PP | |||||||
3 | zf-CCCH | 37.1 | 5.3e-12 | 306 | 330 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f+++tG CkyG++C+++H+ XP_028549055.1 306 GESDCPFYLKTGSCKYGATCRYSHP 330 7889********************9 PP | |||||||
4 | zf-CCCH | 41.6 | 2e-13 | 386 | 411 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++rtG+Ck+G+rCkF+H+ XP_028549055.1 386 PGEAECDYYMRTGHCKFGERCKFHHP 411 5789*********************9 PP | |||||||
5 | zf-CCCH | 41.9 | 1.7e-13 | 443 | 466 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tGtCkyG+ C+F H+p XP_028549055.1 443 VACPFYMKTGTCKYGAACRFDHPP 466 68********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence |
MAKQIYYSTS FPGGVGGGYS LHGTEPYLPV AIGSSFYSTD GTSITGEQAS YIYATQSNGL 60 RAPGTEIPGV AIYSAGNIGA GLNAVSLRGA DGLGVTTTVN AGSKRSAEAL YNQSIMANGT 120 IAPSDALLSA YSLAKRPKLV SASHLPMYPQ RPGEKDCVHY MLTRTCKFGE ACKFDHPVWV 180 PEGGIPDWKE VPLISTTESF PERTGEPDCP SEAIPISSIL PERPSETVCS FYAKTGTCKF 240 GANCKFHHPK DIQIQSAGKY TGYVEKKEST ANNAAAATVD IKHTKAFVPF SPATLSNSKG 300 LPIRPGESDC PFYLKTGSCK YGATCRYSHP DRIFINPTQT ANLSNAFITP AIASLPIGVI 360 NPAASFVPSI DPRFAQLGVT VYPQKPGEAE CDYYMRTGHC KFGERCKFHH PLDRSASTVA 420 SAKPTQESVK LTLAGLPRRE GSVACPFYMK TGTCKYGAAC RFDHPPPGEA IAMAQLSHGI 480 AEADNSSSGD EVESDEEVES ANEVESGGEE EGDDTETSQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-148 | C3H family protein |