PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028549054.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 521aa MW: 55434 Da PI: 6.0592

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028549054.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.6	2.8e-10	153	177	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G+ CkF H+ XP_028549054.1 153 GEKDCVHYMLTRTCKFGEACKFDHP 177 7889********************9 PP
2	zf-CCCH	39.7	7.9e-13	229	252	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 C+f+a+tGtCk+G++CkF+H++ XP_028549054.1 229 TVCSFYAKTGTCKFGANCKFHHPK 252 68********************96 PP
3	zf-CCCH	37.1	5.3e-12	308	332	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f+++tG CkyG++C+++H+ XP_028549054.1 308 GESDCPFYLKTGSCKYGATCRYSHP 332 7889********************9 PP
4	zf-CCCH	41.6	2e-13	388	413	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++rtG+Ck+G+rCkF+H+ XP_028549054.1 388 PGEAECDYYMRTGHCKFGERCKFHHP 413 5789*********************9 PP
5	zf-CCCH	41.8	1.7e-13	445	468	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tGtCkyG+ C+F H+p XP_028549054.1 445 VACPFYMKTGTCKYGAACRFDHPP 468 68********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence
MAKQIYYSTS FPGGVGGGYS LHGTEPYLPV AIGSSFYSTD GTSITGEQAS YIYATQSNGL 60 RAPGTEIPGV AIYSAGNIGA GLNAVSLRGA DGLGVTTTVN AGSKRSAEAL YNQSIMANGT 120 IAPSDALLSA YSLAKRPKLV SASHLPMYPQ RPGEKDCVHY MLTRTCKFGE ACKFDHPVWV 180 PEGGIPDWKE SQVPLISTTE SFPERTGEPD CPSEAIPISS ILPERPSETV CSFYAKTGTC 240 KFGANCKFHH PKDIQIQSAG KYTGYVEKKE STANNAAAAT VDIKHTKAFV PFSPATLSNS 300 KGLPIRPGES DCPFYLKTGS CKYGATCRYS HPDRIFINPT QTANLSNAFI TPAIASLPIG 360 VINPAASFVP SIDPRFAQLG VTVYPQKPGE AECDYYMRTG HCKFGERCKF HHPLDRSAST 420 VASAKPTQES VKLTLAGLPR REGSVACPFY MKTGTCKYGA ACRFDHPPPG EAIAMAQLSH 480 GIAEADNSSS GDEVESDEEV ESANEVESGG EEEGDDTETS Q

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence

MAKQIYYSTS FPGGVGGGYS LHGTEPYLPV AIGSSFYSTD GTSITGEQAS YIYATQSNGL  60
RAPGTEIPGV AIYSAGNIGA GLNAVSLRGA DGLGVTTTVN AGSKRSAEAL YNQSIMANGT  120
IAPSDALLSA YSLAKRPKLV SASHLPMYPQ RPGEKDCVHY MLTRTCKFGE ACKFDHPVWV  180
PEGGIPDWKE SQVPLISTTE SFPERTGEPD CPSEAIPISS ILPERPSETV CSFYAKTGTC  240
KFGANCKFHH PKDIQIQSAG KYTGYVEKKE STANNAAAAT VDIKHTKAFV PFSPATLSNS  300
KGLPIRPGES DCPFYLKTGS CKYGATCRYS HPDRIFINPT QTANLSNAFI TPAIASLPIG  360
VINPAASFVP SIDPRFAQLG VTVYPQKPGE AECDYYMRTG HCKFGERCKF HHPLDRSAST  420
VASAKPTQES VKLTLAGLPR REGSVACPFY MKTGTCKYGA ACRFDHPPPG EAIAMAQLSH  480
GIAEADNSSS GDEVESDEEV ESANEVESGG EEEGDDTETS Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-146	C3H family protein