PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028549053.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 537aa    MW: 57969.8 Da    PI: 6.4338
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028549053.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS313.83.7e-961685362373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ Ll+ A+a+s+g+l  a a +a l+  a++ g+p qRl+a+++ ALa r++   + +        ts+  + e+l++ ++++e+ P++k++ +
  XP_028549053.1 168 RQMLLDTATAISAGNLDTAAANIALLKGAANKLGNPEQRLTAMMVTALALRINPRDPATI-----AVTSDIFTPEHLTSSQMLYEAAPCFKLALM 257
                     689**************************************************9444444.....233323367999999*************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     taN aI ea++ + ++HiiDfd++qGlQ ++ l++La+R +   s++iT++ +p+        +l+ +g++Lak+Ae lg+ ++f++ v +r+++
  XP_028549053.1 258 TANLAIIEATKDHPKIHIIDFDVGQGLQLASXLHSLAERHRH-ISVKITAFCDPTFPfnsLVGNLNLVGDQLAKLAEGLGIGLRFSI-VNRRTTE 350
                     ***************************************665.89********88657778899**********************9.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseer 282
                     l+  +L++ ++Eal+Vn+++ l r+ desvs +++rde+L+ vk l Pkvv++veqe++ n+++F++rf+ea+ +y al++s+ +  +++es+er
  XP_028549053.1 351 LDRAALDCGTDEALVVNFAFLLSRIADESVSPANPRDELLRRVKALGPKVVTLVEQEMNGNTAPFATRFAEACAHYGALLESMeAIIVGQESNER 445
                     ***********************************************************************************555688999*** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     + vE+  l+r+++n va ega+r+er+e ++kW++rl++aGFkpv+l+  +++++kl l+  + + g++v+ee+g +  gW++r + ++SaW
  XP_028549053.1 446 ARVEAC-LARKACNSVAWEGADRVERCEVYGKWKARLGMAGFKPVQLGPGVVETVKLRLASLGnNPGFMVKEEDGRVACGWMGRVINVASAW 536
                     ***987.********************************************************99*************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    
MTSEFPGRDD PRGALRFGVE STGGLFKRSL MTEQEAQNPV FVRSVKQKNH LELPISALSP  60
TSSIQSSLSS ASIPLRGQGN LKFTSWSFPA SASVELEKKS TITNLLLQLE RQLLDDEDDE  120
LSVSDGSAVT NSEWSETMQK LIFPQKPLSN SPTSSSSSSS SSSSASTRQM LLDTATAISA  180
GNLDTAAANI ALLKGAANKL GNPEQRLTAM MVTALALRIN PRDPATIAVT SDIFTPEHLT  240
SSQMLYEAAP CFKLALMTAN LAIIEATKDH PKIHIIDFDV GQGLQLASXL HSLAERHRHI  300
SVKITAFCDP TFPFNSLVGN LNLVGDQLAK LAEGLGIGLR FSIVNRRTTE LDRAALDCGT  360
DEALVVNFAF LLSRIADESV SPANPRDELL RRVKALGPKV VTLVEQEMNG NTAPFATRFA  420
EACAHYGALL ESMEAIIVGQ ESNERARVEA CLARKACNSV AWEGADRVER CEVYGKWKAR  480
LGMAGFKPVQ LGPGVVETVK LRLASLGNNP GFMVKEEDGR VACGWMGRVI NVASAWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.13e-96GRAS family protein